{"id":"W2468716399","doi":"10.1038/srep28980","title":"Widespread detection of highly pathogenic H5 influenza viruses in wild birds from the Pacific Flyway of the United States","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":95,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Fish and Wildlife Service","keywords":"Waterfowl; Influenza A virus subtype H5N1; Flyway; Highly pathogenic; Biology; Clade; Virology; Influenza A virus; Virus; Avian influenza virus; Zoology; Phylogenetics; Ecology; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002199817,0.0001733127,0.0003426915,0.0003496088,0.0002329211,0.00003851903,0.0002353216,0.00008351228,0.00004672652],"category_scores_gemma":[0.002679942,0.000075958,0.0001602811,0.00171702,0.00137964,0.0001434326,0.0002253457,0.0001890124,0.00001312534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001231871,"about_ca_system_score_gemma":0.0002583753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002029589,"about_ca_topic_score_gemma":0.0006819773,"domain_scores_codex":[0.9969006,0.00024517,0.0009132422,0.0004974997,0.001080801,0.0003627259],"domain_scores_gemma":[0.9966616,0.0006179844,0.0005545323,0.001498728,0.0005940573,0.00007307557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001399841,0.00007405388,0.2433592,0.00003050969,0.00006886789,0.00003349093,0.001248368,0.00002564733,0.7506927,0.000009316369,0.001130007,0.003187838],"study_design_scores_gemma":[0.0006338964,0.00008324002,0.1746659,0.0005795956,0.000058302,0.0000262488,0.0007023435,0.00002942153,0.7810869,0.002228596,0.03979501,0.0001106593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966732,0.0006696144,0.0000267572,0.0003835064,0.001369719,0.000647311,0.00005158714,0.00003577793,0.0001425692],"genre_scores_gemma":[0.9992777,0.00007365617,0.00003174236,0.0001144605,0.00004159038,0.00003895249,0.000006898988,0.00002013326,0.0003948568],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06869337,"threshold_uncertainty_score":0.508334,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05370542083386057,"score_gpt":0.324372113073446,"score_spread":0.2706666922395854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}