{"id":"W2468779414","doi":"10.1155/2016/9156735","title":"Analyses of<i> Physcomitrella patens</i> Ankyrin Repeat Proteins by Computational Approach","year":2016,"lang":"en","type":"article","venue":"Molecular Biology International","topic":"Plant nutrient uptake and metabolism","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; McGill University","funders":"","keywords":"Physcomitrella patens; Ankyrin repeat; Subfamily; Ankyrin; Phylogenetic tree; Biology; In silico; Computational biology; Evolutionary biology; Functional divergence; Protein domain; Nonsynonymous substitution; GenBank; Genome; Genetics; Gene; Gene family","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001047837,0.00011334,0.0001574978,0.00002242822,0.00003791319,0.000009716699,0.0002803374,0.00008960209,0.00014429],"category_scores_gemma":[0.00004506201,0.00003883933,0.0001171049,0.00009915003,0.0001018622,0.00004229632,0.00006361002,0.00004769694,0.00001681097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001155376,"about_ca_system_score_gemma":0.000006877697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006600573,"about_ca_topic_score_gemma":0.000002589699,"domain_scores_codex":[0.9991027,0.00008190817,0.0002242693,0.0002750124,0.0001598908,0.0001562752],"domain_scores_gemma":[0.9995914,0.0000791416,0.0001270325,0.00004689001,0.0001081804,0.00004734236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003017291,0.0001168374,0.003899655,7.533832e-7,0.00007140196,0.000002512774,0.000004396421,0.000007545068,0.9734824,0.003888832,0.001094554,0.01740094],"study_design_scores_gemma":[0.000960764,0.0002171239,0.01988905,0.00002985409,0.00003743523,0.00003815828,0.00002259268,0.0002429079,0.8461363,0.01118454,0.1208834,0.0003579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9822466,0.0004067157,0.01192739,0.001374256,0.0001480179,0.0001460103,0.0007927252,0.00003301532,0.002925272],"genre_scores_gemma":[0.9971215,0.00007963946,0.001141197,0.0003110649,0.0000844487,0.0000188884,0.0008516705,9.772181e-7,0.0003906755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1273461,"threshold_uncertainty_score":0.1583822,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02476922272423287,"score_gpt":0.2689232140890013,"score_spread":0.2441539913647685,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}