{"id":"W2469896511","doi":"10.3382/ps/pew194","title":"Discovery of an expanded set of avian leukosis subgroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline","year":2016,"lang":"en","type":"article","venue":"Poultry Science","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"McGill University; Canadian Institutes of Health Research; University of California, Santa Cruz","keywords":"Genome; Biology; Endogenous retrovirus; Genetics; DNA sequencing; Gene; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001278172,0.0006214444,0.0006003341,0.001318635,0.0005599697,0.0009478425,0.0004797971,0.0006329423,0.001086136],"category_scores_gemma":[0.001149492,0.000556439,0.0009251834,0.0005711784,0.0002453419,0.0005722806,0.0007547346,0.0005796222,0.0005305479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004596302,"about_ca_system_score_gemma":0.000566523,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002164764,"about_ca_topic_score_gemma":0.004335419,"domain_scores_codex":[0.9994098,0.00004868759,0.0000376733,0.0003249363,0.0001311548,0.00004777846],"domain_scores_gemma":[0.9995722,0.0001815137,0.00009563084,0.00004678069,0.00005746829,0.00004642221],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008277787,0.00005955723,0.02048085,0.0003010091,0.0001735158,0.000602697,0.0004795982,0.003780173,0.876209,0.0006968376,0.001701318,0.09468774],"study_design_scores_gemma":[0.0001652093,0.0007385079,0.05251172,0.00009957267,0.0002864406,0.001930612,0.0003169722,0.1496487,0.7623371,0.001794005,0.03001035,0.0001608497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7079638,0.001414171,0.2543472,0.0003209613,0.00008799774,0.0003034063,0.009171365,0.02213038,0.004260629],"genre_scores_gemma":[0.3774424,0.0004500691,0.598589,0.0002911096,0.00001775839,0.0002846596,0.01747586,0.001940961,0.003508086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002164764,"threshold_uncertainty_score":0.006759703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05228139336364294,"score_gpt":0.3387853253331074,"score_spread":0.2865039319694644,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}