{"id":"W2472445905","doi":"10.1371/journal.pone.0158259","title":"Extensive Transcriptomic and Genomic Analysis Provides New Insights about Luminal Breast Cancers","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"BC Cancer Agency; Australian Research Council; Cancer Research UK","keywords":"Transcriptome; Breast cancer; Computational biology; Biology; Bioinformatics; Medicine; Genetics; Cancer; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000218886,0.0001762103,0.0002712719,0.00006974165,0.00007534909,0.00001492913,0.00008846608,0.000068088,0.00002265891],"category_scores_gemma":[0.00001251414,0.0001259549,0.00008598403,0.0001025049,0.0001338722,0.000006431919,0.00004539804,0.00003164979,0.000009421744],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008352903,"about_ca_system_score_gemma":0.0001277821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004833175,"about_ca_topic_score_gemma":0.001473106,"domain_scores_codex":[0.9990967,0.00002480971,0.0001396487,0.0004124677,0.0001137478,0.0002126472],"domain_scores_gemma":[0.9994894,0.00001159069,0.00006102204,0.0002398579,0.00008344973,0.0001146446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003091042,0.0001478155,0.04087095,0.00002604721,0.005353906,0.000004811817,0.0002997438,0.000002777004,0.9472772,0.00001510888,0.0003771559,0.005315322],"study_design_scores_gemma":[0.002947889,0.0002702205,0.6982946,0.0001594298,0.004541234,0.00002262452,0.0001576379,0.00001658914,0.291462,0.0001281823,0.001465614,0.0005340046],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925489,0.0059376,0.0001950295,0.0008906029,0.00002680816,0.0001641679,0.000089176,0.00001567061,0.0001320227],"genre_scores_gemma":[0.9962674,0.001938629,0.000413161,0.0001886651,0.0003151694,0.00003885345,0.00002706792,0.00001907327,0.0007920259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6574236,"threshold_uncertainty_score":0.5136292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0153131673996984,"score_gpt":0.2110758664800077,"score_spread":0.1957626990803093,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}