{"id":"W2479869838","doi":"10.1038/srep30858","title":"Epidemiological and Evolutionary Inference of the Transmission Network of the 2014 Highly Pathogenic Avian Influenza H5N2 Outbreak in British Columbia, Canada","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; Canadian Food Inspection Agency","funders":"","keywords":"Outbreak; Influenza A virus subtype H5N1; Transmission (telecommunications); Phylogenetic tree; Clade; Biology; Phylogenetics; Virology; Virus; Lineage (genetic); Geography; Evolutionary biology; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00098522,0.0002621298,0.0003237113,0.003560039,0.002181788,0.001438337,0.0008366195,0.0003985028,0.001003739],"category_scores_gemma":[0.005472907,0.0003185099,0.0003422443,0.004228322,0.0006455518,0.0003286072,0.0005803813,0.0006077897,0.0001799719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01312361,"about_ca_system_score_gemma":0.01162473,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9679084,"about_ca_topic_score_gemma":0.9728376,"domain_scores_codex":[0.9994044,0.0001178106,0.00004469033,0.0001511495,0.0001167003,0.0001651455],"domain_scores_gemma":[0.9982873,0.0003992339,0.0002711897,0.00009660876,0.0007468811,0.0001987396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001769886,0.00007056341,0.9517077,0.00008454465,0.0001921912,0.0004643623,0.001533706,0.02671896,0.00199422,0.001192607,0.001459313,0.01440471],"study_design_scores_gemma":[0.00001301605,0.00002077711,0.9426219,0.00007878641,0.00006841806,0.0001537945,0.002174438,0.05206805,0.0002052858,0.0003954814,0.002174646,0.00002531263],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99479,0.0002328088,0.0006400268,0.0001227842,0.000003311487,0.00004481718,0.002373549,0.00001702974,0.001775731],"genre_scores_gemma":[0.9937503,0.0002529791,0.001889654,0.00003253672,0.000002058597,0.00001689543,0.003736917,0.000006469764,0.0003122722],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03209156,"threshold_uncertainty_score":0.09521896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0318720347351405,"score_gpt":0.295276826822174,"score_spread":0.2634047920870335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}