{"id":"W2481489402","doi":"10.1094/mpmi-04-16-0068-r","title":"Promiscuous Pathogenicity Islands and Phylogeny of Pathogenic <i>Streptomyces</i> spp.","year":2016,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"National Institute of Food and Agriculture; U.S. Department of Agriculture","keywords":"Streptomyces; Biology; Microbiology; Common scab; Pathogenicity island; Gene; Genetics; Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006738611,0.0001630298,0.0001942035,0.00002026236,0.00009486276,0.00002563257,0.0001533119,0.00006813663,0.0002207105],"category_scores_gemma":[0.00002948,0.00006051728,0.0001339497,0.0001171133,0.00006538263,0.00006775375,0.00006967967,0.00007124794,0.0000313274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001554759,"about_ca_system_score_gemma":0.00001390847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002983496,"about_ca_topic_score_gemma":0.0003410317,"domain_scores_codex":[0.9990298,0.00006365273,0.0002409454,0.0002986024,0.0001246818,0.0002423726],"domain_scores_gemma":[0.9995001,0.0001213854,0.0001190525,0.00009384257,0.00005674108,0.0001088567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005313673,0.00008403626,0.003144538,0.000009704191,0.00004113453,0.0000446316,0.00001740809,4.444856e-7,0.9868961,0.00003012205,0.0008666559,0.008812081],"study_design_scores_gemma":[0.0003799735,0.0001571853,0.06333106,0.0001553992,0.00009182497,0.0002971813,0.00007218898,0.00001105486,0.8966812,0.0003173342,0.03815893,0.000346603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955313,0.0005192482,0.00008982003,0.0002864696,0.00008682787,0.0001570178,0.00283234,0.00003425471,0.0004627063],"genre_scores_gemma":[0.9989018,0.0003334743,0.0001127122,0.0001513498,0.00005610898,0.00001471158,0.0001408311,0.000001915949,0.0002870531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09021484,"threshold_uncertainty_score":0.2467823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006921255489902175,"score_gpt":0.1937413465977559,"score_spread":0.1868200911078538,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}