{"id":"W2481643928","doi":"10.4049/jimmunol.1600096","title":"Clonal Characteristics of Circulating B Lymphocyte Repertoire in Primary Biliary Cholangitis","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Somatic hypermutation; Biology; Immunology; Primary biliary cirrhosis; Somatic evolution in cancer; Pathogenesis; Immune system; Somatic cell; Lymphocyte; Repertoire; Autoantibody; Ursodeoxycholic acid; Antibody; Gene; B cell; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005039786,0.00007730182,0.0003415269,0.0001104541,0.0000347071,0.00000220562,0.0001689589,0.00006432682,0.0001087096],"category_scores_gemma":[0.0002850105,0.00003884612,0.0001081243,0.00009202548,0.0001840962,0.00009591769,0.00007300868,0.0001937991,0.000005410363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001721663,"about_ca_system_score_gemma":0.0002762686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005489963,"about_ca_topic_score_gemma":4.706291e-7,"domain_scores_codex":[0.9989646,0.0001795269,0.0005249283,0.00005022769,0.0001351289,0.0001455605],"domain_scores_gemma":[0.9988646,0.0002581909,0.0004299008,0.0002518262,0.0001625122,0.00003298375],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002686135,0.0002678487,0.2594082,0.00007869503,0.0003210846,0.0001820137,0.0005042312,5.557882e-7,0.6244696,0.00004823127,0.00008115533,0.1119522],"study_design_scores_gemma":[0.002308472,0.0004204952,0.9910612,0.0005150242,0.0000981375,0.00191243,0.0001227791,0.000004126774,0.003183947,0.00009551082,0.0002315082,0.00004642614],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995169,0.003308256,0.00003747584,0.0009642972,0.0001979635,0.000064638,0.000008739963,0.000003911674,0.0002457395],"genre_scores_gemma":[0.9970429,0.0025192,0.00007614546,0.0001718808,0.00008418702,5.035823e-7,0.000002294933,0.000009459333,0.00009340687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7316529,"threshold_uncertainty_score":0.1584098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179270200945248,"score_gpt":0.232795720442753,"score_spread":0.2210030184333006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}