{"id":"W2484995089","doi":"10.1080/19490976.2016.1216747","title":"Partial recovery of microbiomes after antibiotic treatment","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Metagenomics; Microbiome; Biology; Antibiotics; Shotgun sequencing; Antibiotic resistance; Population; Resistome; Genetics; Microbiology; Genome; Gene; Computational biology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003672389,0.0003401839,0.001010229,0.0004427379,0.000399008,0.0008316847,0.0002184861,0.000571554,0.001908421],"category_scores_gemma":[0.001286951,0.0001958799,0.0006305481,0.0005263506,0.0003704482,0.0004171437,0.0007592389,0.001068712,0.0006531021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002901011,"about_ca_system_score_gemma":0.0004031319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001415523,"about_ca_topic_score_gemma":0.001449914,"domain_scores_codex":[0.9992309,0.00008868291,0.00004464814,0.0001758846,0.0002739105,0.000186051],"domain_scores_gemma":[0.9992548,0.0001200001,0.0001875195,0.0001355595,0.0001417388,0.0001603627],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000989946,0.00005590915,0.01738656,0.0001681701,0.0001096681,0.0002228775,0.0001519472,0.0001822978,0.959739,0.00005872094,0.0003590965,0.02057573],"study_design_scores_gemma":[0.00003021353,0.001066828,0.6658104,0.00006380054,0.0001607213,0.001409573,0.0006238633,0.00139451,0.3155985,0.000478742,0.01331358,0.0000493241],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906237,0.003027989,0.00250644,0.0002719427,0.0000465556,0.00003418792,0.002508173,0.0001282182,0.0008528025],"genre_scores_gemma":[0.9909748,0.0008779336,0.002419971,0.000320745,0.00002493638,0.00005791074,0.004014877,0.00005971798,0.001248987],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001908421,"threshold_uncertainty_score":0.006384313,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007303121138129212,"score_gpt":0.2380050462048047,"score_spread":0.2307019250666755,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}