{"id":"W2485264132","doi":"10.1094/phyto-05-16-0188-r","title":"Genome Analysis and Development of a Multiplex TaqMan Real-Time PCR for Specific Identification and Detection of <i>Clavibacter michiganensis</i> subsp. <i>nebraskensis</i>","year":2016,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of General Medical Sciences; Agriculture and Agri-Food Canada; McGill University","keywords":"Clavibacter michiganensis; Biology; Genome; Proteome; TaqMan; Multiplex polymerase chain reaction; Multiplex; Microbiology; Strain (injury); Homology (biology); Polymerase chain reaction; Genetics; Gene; Pathogen","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003123982,0.0001334829,0.000391303,0.00005371791,0.00009913599,0.000008296771,0.0000818452,0.00008285429,0.00001302182],"category_scores_gemma":[0.00003376207,0.00005644192,0.00006806351,0.0002038162,0.0001519778,0.00006889755,0.00006799748,0.00002461444,0.000003367799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000120093,"about_ca_system_score_gemma":0.000004429657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001196915,"about_ca_topic_score_gemma":0.0005647846,"domain_scores_codex":[0.9988834,0.00007223315,0.0004199658,0.0003615531,0.00007657096,0.0001863249],"domain_scores_gemma":[0.99923,0.0002466476,0.0002928306,0.00007626533,0.0001117784,0.00004247487],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007917933,0.00003210242,0.01725851,0.00001408981,0.00006180046,7.628996e-7,0.0001833634,4.344615e-8,0.9631827,0.000007023396,0.000002865948,0.01917749],"study_design_scores_gemma":[0.0001585221,0.00005770658,0.6493616,0.000005947614,0.0000664589,0.000009855529,0.0000285995,0.000001890169,0.3492771,0.00003858366,0.0009097612,0.000083962],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998778,0.0001657878,0.0003463417,0.000140269,0.00004675946,0.0002379053,0.0002525276,0.00002035163,0.00001208657],"genre_scores_gemma":[0.9982085,0.000399912,0.001189534,0.0000129146,0.00004508008,0.00003131906,0.00006809604,0.000001547648,0.00004314352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6321031,"threshold_uncertainty_score":0.2301635,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01606085098752015,"score_gpt":0.2043883914625338,"score_spread":0.1883275404750137,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}