{"id":"W2485264132","doi":"10.1094/phyto-05-16-0188-r","title":"Genome Analysis and Development of a Multiplex TaqMan Real-Time PCR for Specific Identification and Detection of <i>Clavibacter michiganensis</i> subsp. <i>nebraskensis</i>","year":2016,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of General Medical Sciences; Agriculture and Agri-Food Canada; McGill University","keywords":"Clavibacter michiganensis; Biology; Genome; Proteome; TaqMan; Multiplex polymerase chain reaction; Multiplex; Microbiology; Strain (injury); Homology (biology); Polymerase chain reaction; Genetics; Gene; Pathogen","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006636648,0.0007240143,0.0005478893,0.0007582212,0.0002815456,0.0005545118,0.0005390337,0.0006448925,0.001355499],"category_scores_gemma":[0.0009918124,0.0005037791,0.0007420756,0.000676184,0.0003136425,0.000314405,0.0003446291,0.000703786,0.0008991156],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006184776,"about_ca_system_score_gemma":0.000743468,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0020977,"about_ca_topic_score_gemma":0.004782983,"domain_scores_codex":[0.9987597,0.0001265926,0.00008916142,0.0004973167,0.0003924887,0.0001346551],"domain_scores_gemma":[0.9995773,0.00009719059,0.0001129651,0.00005006203,0.0001280314,0.00003447075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005695266,0.00004989391,0.00157273,0.00004361027,0.000007650626,0.00003833033,0.00004718183,0.0001983465,0.9940597,0.0001761568,0.000103687,0.003645681],"study_design_scores_gemma":[0.00003066073,0.0005182339,0.01824961,0.00002580518,0.00006528795,0.0002748405,0.0001133285,0.007299986,0.963698,0.0001671832,0.009524751,0.00003227792],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7344971,0.000872913,0.2434712,0.0003655006,0.0001718105,0.001166265,0.01118546,0.00197844,0.006291251],"genre_scores_gemma":[0.543522,0.0006630242,0.4273478,0.0004214969,0.00004084117,0.00204628,0.01981395,0.0002387855,0.005905757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0020977,"threshold_uncertainty_score":0.004534602,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01606085098752015,"score_gpt":0.2043883914625338,"score_spread":0.1883275404750137,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}