{"id":"W2485433137","doi":"10.1038/srep31014","title":"The CD4+ T cell methylome contributes to a distinct CD4+ T cell transcriptional signature in Mycobacterium bovis-infected cattle","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trinity College","funders":"Trinity College Dublin; Teagasc; Department of Agriculture, Food and the Marine, Ireland; AgResearch","keywords":"Biology; DNA methylation; Epigenetics; Differentially methylated regions; Gene; Transcriptome; Bisulfite sequencing; Methylation; Gene expression; GATA3; T cell; Molecular biology; Genetics; Transcription factor; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002511845,0.0002740318,0.0004159571,0.0003749449,0.0003706198,0.0003479543,0.0002365627,0.0001649446,0.0006429538],"category_scores_gemma":[0.00162323,0.0001373963,0.0002143228,0.001118783,0.0003480647,0.0001852064,0.0001077712,0.0003112675,0.0002316512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002608348,"about_ca_system_score_gemma":0.0006406691,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001095487,"about_ca_topic_score_gemma":0.0002508849,"domain_scores_codex":[0.9961862,0.0001761082,0.0007634243,0.0009755817,0.0009596638,0.000939041],"domain_scores_gemma":[0.996961,0.0006484941,0.0001897436,0.00107702,0.0005493551,0.0005743616],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002264606,0.0003040842,0.0687825,0.00007702687,0.00002119347,0.0004974303,0.000137563,0.000001009498,0.8571017,0.00003218986,0.07163848,0.001180394],"study_design_scores_gemma":[0.00128844,0.0002031308,0.3011324,0.0002117263,0.00005388295,0.00008511814,0.00005462849,0.00000476428,0.308582,0.001029942,0.3870881,0.000265852],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843127,0.0009465966,0.0002732326,0.006335365,0.004252984,0.001239443,0.00009465733,0.00009057552,0.002454427],"genre_scores_gemma":[0.9817609,0.00004844761,0.00009673678,0.000174267,0.0001696305,0.0002095166,0.0001453376,0.00003080544,0.01736437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5485197,"threshold_uncertainty_score":0.7039893,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01056182648546553,"score_gpt":0.2580686633937386,"score_spread":0.2475068369082731,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}