{"id":"W2497451327","doi":"10.1139/gen-2016-0073","title":"Gene flow, recombination, and positive selection in <i>Stenotrophomonas maltophilia</i>: mechanisms underlying the diversity of the widespread opportunistic pathogen","year":2016,"lang":"en","type":"article","venue":"Genome","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Biology; Stenotrophomonas maltophilia; Genome; Genetics; Stenotrophomonas; Genetic diversity; Comparative genomics; Gene; Genome evolution; Bacterial genome size; Genomics; Evolutionary biology; Bacteria; Pseudomonas aeruginosa; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002368176,0.000204978,0.0002477697,0.0006975426,0.0003146704,0.000480119,0.0002263208,0.0003290394,0.0005661913],"category_scores_gemma":[0.0004251798,0.0001124418,0.0001763482,0.0008901728,0.0002767573,0.0004383862,0.00029521,0.0002583018,0.0001125323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004590509,"about_ca_system_score_gemma":0.000225861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001161739,"about_ca_topic_score_gemma":0.0009470779,"domain_scores_codex":[0.999861,0.00003415785,0.000009056292,0.00004253661,0.00002124677,0.00003201518],"domain_scores_gemma":[0.9997728,0.00006637551,0.0000896087,0.00001243743,0.000027027,0.00003161184],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006536522,0.00006299672,0.09100577,0.0003645148,0.00006739933,0.0006063691,0.0007851681,0.003593501,0.8455288,0.004129192,0.0001953913,0.05300717],"study_design_scores_gemma":[0.00005809177,0.0006632461,0.7946917,0.0001243241,0.0002386321,0.003696644,0.001573181,0.03585887,0.1378722,0.009381588,0.01573919,0.0001023674],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933537,0.00227805,0.003364979,0.00007570308,0.000002479755,0.00001086972,0.0001435681,0.0000269383,0.0007436178],"genre_scores_gemma":[0.9968607,0.001159554,0.001487188,0.00001737461,0.000005060008,0.00001170056,0.0002170802,0.000006943566,0.0002342979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001161739,"threshold_uncertainty_score":0.003330648,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01270563523554443,"score_gpt":0.2100136302671553,"score_spread":0.1973079950316109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}