{"id":"W2497451327","doi":"10.1139/gen-2016-0073","title":"Gene flow, recombination, and positive selection in <i>Stenotrophomonas maltophilia</i>: mechanisms underlying the diversity of the widespread opportunistic pathogen","year":2016,"lang":"en","type":"article","venue":"Genome","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Biology; Stenotrophomonas maltophilia; Genome; Genetics; Stenotrophomonas; Genetic diversity; Comparative genomics; Gene; Genome evolution; Bacterial genome size; Genomics; Evolutionary biology; Bacteria; Pseudomonas aeruginosa; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001669167,0.00006948916,0.00006861694,0.00001891172,0.0002130341,0.000008483766,0.0001005198,0.00005726041,0.000009439381],"category_scores_gemma":[0.00004544749,0.00003945238,0.0000351519,0.00007976273,0.00006298546,0.000004618743,0.0001658825,0.00003270178,8.663383e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003193339,"about_ca_system_score_gemma":0.000037868,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005316177,"about_ca_topic_score_gemma":0.0001389794,"domain_scores_codex":[0.9994856,0.00007362756,0.0001089221,0.0001578411,0.00006552991,0.0001085113],"domain_scores_gemma":[0.9996971,0.00001796094,0.00007121767,0.0001221399,0.00007156905,0.00001996445],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003696213,0.00001652828,0.001021303,0.000003646073,0.00001367178,6.658837e-7,0.00004125083,0.000006143188,0.997247,0.000494416,0.000003951205,0.001114485],"study_design_scores_gemma":[0.000632227,0.0002443057,0.7455797,0.000031363,0.00003324788,0.00002821783,0.00004580161,0.0000124829,0.2476792,0.004903156,0.000651899,0.0001584051],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942423,0.00006540164,0.004909449,0.0002743641,0.0001182761,0.0001675089,0.00007942218,0.000002964112,0.0001403197],"genre_scores_gemma":[0.9992192,0.0001732575,0.0001848993,0.00007074066,0.00001967306,0.000006570738,0.00001193222,0.000005995798,0.0003076809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7495677,"threshold_uncertainty_score":0.1638508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01270563523554443,"score_gpt":0.2100136302671553,"score_spread":0.1973079950316109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}