{"id":"W2499368570","doi":"10.3389/fmicb.2016.01138","title":"Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China","year":2016,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Genome; Phylogenetic tree; Genetics; Listeria monocytogenes; Virulence; Whole genome sequencing; Comparative genomics; Gene; Strain (injury); Genomics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000424765,0.0005446655,0.0004741352,0.001905917,0.0006413144,0.0006255208,0.0002777597,0.0003161269,0.0004299624],"category_scores_gemma":[0.0005401609,0.000256191,0.0004602888,0.002714011,0.0004495652,0.0001588577,0.0005718433,0.0001988592,0.0001007223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008511303,"about_ca_system_score_gemma":0.001065659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03636381,"about_ca_topic_score_gemma":0.03807043,"domain_scores_codex":[0.9996043,0.00004135898,0.00004641556,0.000122783,0.0001009158,0.00008422272],"domain_scores_gemma":[0.9995027,0.00005319766,0.0001316608,0.00002477779,0.0001630958,0.0001245739],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003231289,0.00003248448,0.9516795,0.0001499186,0.0001084482,0.0008567275,0.001907865,0.0003138229,0.03752809,0.00004842764,0.0003219589,0.006729465],"study_design_scores_gemma":[0.000007101538,0.00005441059,0.9978516,0.000009313632,0.00003662948,0.0002793421,0.0005182817,0.0002144662,0.0006135434,0.0000144259,0.0003941152,0.000006844127],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991004,0.0001852894,0.00008493878,0.00001981355,0.000003155232,0.000007313488,0.0004789885,0.000003906163,0.0001162209],"genre_scores_gemma":[0.9961383,0.0002450751,0.0003063979,0.00008034801,0.000006800743,0.00001801192,0.00292713,0.000006849605,0.0002710975],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03636381,"threshold_uncertainty_score":0.07230431,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04757071337427672,"score_gpt":0.2861707836982608,"score_spread":0.2386000703239841,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}