{"id":"W2500884940","doi":"10.1093/jac/dkw277","title":"Tracking inter-institutional spread of NDM and identification of a novel NDM-positive plasmid, pSg1-NDM, using next-generation sequencing approaches","year":2016,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Medical Research Council; Medical Research Council; National Healthcare Group","keywords":"Plasmid; Klebsiella pneumoniae; Biology; Microbiology; Escherichia coli; Genetics; Enterobacteriaceae; GenBank; Transposition (logic); Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005585832,0.0002021242,0.0001778514,0.0008460681,0.0002443423,0.0004570486,0.0002345939,0.0002608909,0.0005152072],"category_scores_gemma":[0.0008824277,0.0001345806,0.0002098151,0.001009281,0.0001619573,0.0002454563,0.000520547,0.0002842872,0.0001925693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005349386,"about_ca_system_score_gemma":0.0005120687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006894122,"about_ca_topic_score_gemma":0.01249134,"domain_scores_codex":[0.9995795,0.0000763218,0.00004027442,0.0001335137,0.00009708806,0.00007326586],"domain_scores_gemma":[0.9991009,0.0001207571,0.000388131,0.00007802598,0.0002211688,0.00009093498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001409801,0.00004633656,0.8722553,0.0001146221,0.00005497373,0.0002634042,0.0008476998,0.0006691238,0.1002736,0.0001615102,0.0001934337,0.02497909],"study_design_scores_gemma":[0.000004673525,0.0001457439,0.9713661,0.00002054405,0.00003777969,0.0003111004,0.0006551126,0.003294602,0.02209809,0.00005806512,0.001997878,0.00001038329],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975285,0.00008391423,0.001358786,0.00002117669,0.000001490001,0.00002178423,0.0006058121,0.00001704189,0.0003614609],"genre_scores_gemma":[0.9931722,0.0001329841,0.00465233,0.00002401684,0.000002003647,0.0000286108,0.001435629,0.000006203034,0.000546049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006894122,"threshold_uncertainty_score":0.013708,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07281343408187434,"score_gpt":0.2705130743385873,"score_spread":0.197699640256713,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}