{"id":"W2502061300","doi":"10.1016/j.crvi.2016.06.002","title":"Analyses of genetic diversity of bacterial blight pathogen, Xanthomonas oryzae pv. oryzae using IS1112 in Bangladesh","year":2016,"lang":"en","type":"article","venue":"Comptes Rendus Biologies","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"International Foundation for Science","keywords":"Xanthomonas oryzae; Biology; Xanthomonas oryzae pv. oryzae; Dendrogram; Virulence; Veterinary medicine; Genotype; Genetic diversity; Xanthomonas; Bacterial blight; Haplotype; Locus (genetics); Genetics; Pathogen; Gene; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002163407,0.0002369007,0.0005928398,0.00005815822,0.0001381878,0.00001129966,0.000529972,0.0001721576,0.0005679507],"category_scores_gemma":[0.0002052055,0.00008225011,0.0001629485,0.0003642584,0.0004166161,0.00009966886,0.0008886582,0.00006765662,0.0000112595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003860378,"about_ca_system_score_gemma":0.00001435821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002719049,"about_ca_topic_score_gemma":0.0004588345,"domain_scores_codex":[0.9983522,0.0002375665,0.0004988579,0.00038932,0.0001611894,0.0003608153],"domain_scores_gemma":[0.9987727,0.0005961144,0.0003485177,0.0001309957,0.0001021851,0.00004945823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007444456,0.00005405136,0.2677852,0.000009833088,0.00003840668,0.000006639291,0.00003934994,0.000001592272,0.7271347,0.000008042961,0.0000926917,0.004755091],"study_design_scores_gemma":[0.0002564636,0.0002054836,0.8086203,0.00009079137,0.00003705801,0.00000820284,0.0002016187,0.000006951096,0.1897446,0.0001356373,0.0004862159,0.0002067523],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966044,0.001645474,0.00001007695,0.00009917795,0.0002382734,0.0001464125,0.00112427,0.00004616272,0.00008569939],"genre_scores_gemma":[0.9983525,0.00083696,0.0006224383,0.000008306662,0.00009909952,0.000004038476,0.00005603268,0.000001311057,0.00001935791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5408351,"threshold_uncertainty_score":0.6218662,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1052015423349471,"score_gpt":0.2726527434577938,"score_spread":0.1674512011228467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}