{"id":"W2502518641","doi":"10.1038/srep31109","title":"High density genome wide genotyping-by-sequencing and association identifies common and low frequency SNPs, and novel candidate genes influencing cow milk traits","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"Iowa State University","keywords":"Single-nucleotide polymorphism; Genome-wide association study; Biology; Genetics; Genotyping; SNP genotyping; Candidate gene; Minor allele frequency; Quantitative trait locus; Genetic association; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001538556,0.0004475952,0.0007479906,0.001270942,0.0004730602,0.0007029601,0.0003605586,0.0005592006,0.001219896],"category_scores_gemma":[0.001672579,0.0002152959,0.0006400476,0.001612822,0.0003689389,0.0001230822,0.0004602315,0.0005719081,0.0003666291],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005744608,"about_ca_system_score_gemma":0.001225221,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02919313,"about_ca_topic_score_gemma":0.08564854,"domain_scores_codex":[0.9990522,0.0002530736,0.00003998699,0.0002765688,0.0002707735,0.0001072807],"domain_scores_gemma":[0.9990755,0.000409815,0.0001657975,0.000130947,0.0001361538,0.00008182727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009391178,0.0001657058,0.2604559,0.0004263928,0.0008722852,0.0007459944,0.0006819979,0.006105399,0.6040767,0.001414073,0.002064575,0.1220519],"study_design_scores_gemma":[0.0001213417,0.0003154539,0.9261832,0.00004293146,0.0005249852,0.001054444,0.0001925841,0.01941824,0.03775465,0.0009718138,0.01336442,0.00005588985],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9154739,0.00209425,0.0697985,0.0002525511,0.00004015031,0.0003177662,0.008025622,0.0005183021,0.003478959],"genre_scores_gemma":[0.8886534,0.001107775,0.09446706,0.0003847891,0.00003489681,0.0002051784,0.01056983,0.0001446188,0.004432546],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02919313,"threshold_uncertainty_score":0.0580464,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006454717803706905,"score_gpt":0.2049426341601918,"score_spread":0.1984879163564849,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}