{"id":"W2503210767","doi":"10.1007/978-1-61779-448-3_6","title":"Sharing Expression Profiling Data with Gemma","year":2011,"lang":"en","type":"book-chapter","venue":"Neuromethods","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Gemma; Profiling (computer programming); Computational biology; Computer science; Biology; Genetics; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002751586,0.0003117741,0.0002305298,0.00009983328,0.00009233357,0.00003533081,0.0009024245,0.0003694955,0.0002302804],"category_scores_gemma":[0.0000456551,0.0002574342,0.00005913236,0.00003085701,0.00007583159,0.000006855811,0.0008302071,0.0003006896,0.00002257474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009151529,"about_ca_system_score_gemma":0.00008945964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001591192,"about_ca_topic_score_gemma":0.000001510922,"domain_scores_codex":[0.9981481,0.00004759641,0.0002450554,0.001149301,0.0002102587,0.0001997001],"domain_scores_gemma":[0.9973044,0.00001181872,0.0002496684,0.002248108,0.00007799776,0.0001080144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001987439,0.00002271194,0.00009748447,0.00007788612,0.00004633489,0.00001269911,0.00001688067,0.000006171186,0.9637428,0.001968137,0.007544205,0.02626596],"study_design_scores_gemma":[0.0002603206,0.0001977782,0.00008932247,0.0001451003,0.00004339223,0.00002709614,0.000004524656,0.00002716385,0.2854628,0.0009316429,0.7124186,0.0003922689],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.002231169,0.001952058,0.0527898,0.00007511445,0.0007935223,0.0007094702,0.0001437725,0.0001022247,0.9412029],"genre_scores_gemma":[0.008949095,0.00189404,0.1269279,0.0006034146,0.001433677,0.00007859783,0.00267151,0.0003989622,0.8570428],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.7048743,"threshold_uncertainty_score":0.9999878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1349102595613214,"score_gpt":0.3344186418160733,"score_spread":0.199508382254752,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}