{"id":"W2507047328","doi":"10.1128/jcm.00422-16","title":"Phenotypic H-Antigen Typing by Mass Spectrometry Combined with Genetic Typing of H Antigens, O Antigens, and Toxins by Whole-Genome Sequencing Enhances Identification of Escherichia coli Isolates","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; Ste. Anne's Hospital; Public Health Agency of Canada; Nova Scotia Health Authority; University of Manitoba","funders":"Public Health Agency of Canada","keywords":"Typing; Biology; Serotype; Escherichia coli; Antigen; Shiga toxin; H antigen; Genetics; Genome; Gene; Virulence; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008442276,0.0005049885,0.0006824704,0.001087715,0.0001484019,0.000910721,0.0003302689,0.0004825967,0.0005602305],"category_scores_gemma":[0.001289198,0.0003893505,0.0004412466,0.0006319685,0.000254161,0.0006083217,0.001088192,0.0004506802,0.0005336127],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001173892,"about_ca_system_score_gemma":0.0002031467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004955496,"about_ca_topic_score_gemma":0.0009672602,"domain_scores_codex":[0.9988159,0.0003068344,0.00009688611,0.0002700189,0.0003960193,0.0001143653],"domain_scores_gemma":[0.999278,0.0002152329,0.0001796788,0.0001151806,0.0001249464,0.00008698899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002001495,0.00008095754,0.01592294,0.00004570203,0.0000418498,0.00004793749,0.00003618588,0.0002190885,0.970997,0.00002926314,0.0000554405,0.01232345],"study_design_scores_gemma":[0.00003194231,0.0009420738,0.2828691,0.00003397053,0.0003213217,0.001580964,0.0001985335,0.0176889,0.693746,0.000271266,0.002268269,0.00004769424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9759392,0.0005211293,0.02150068,0.0001088421,0.00002003176,0.00008126459,0.0004413811,0.0002550719,0.001132465],"genre_scores_gemma":[0.9395502,0.0004344833,0.0579684,0.0001757575,0.00005102879,0.00005534898,0.0008884345,0.00005264073,0.0008236454],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001087715,"threshold_uncertainty_score":0.004464746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01722641460447251,"score_gpt":0.3008422900071256,"score_spread":0.2836158754026532,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}