{"id":"W2507774815","doi":"10.1111/pce.12793","title":"Variation of DNA methylation patterns associated with gene expression in rice (<i>Oryza sativa</i>) exposed to cadmium","year":2016,"lang":"en","type":"article","venue":"Plant Cell & Environment","topic":"Plant Genetic and Mutation Studies","field":"Agricultural and Biological Sciences","cited_by":182,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Northeast Normal University","keywords":"DNA methylation; Biology; Gene; Methylation; Genetics; Epigenetics; RNA-Directed DNA Methylation; Genome; Transcriptome; DNA demethylation; Molecular biology; Oryza sativa; Epigenomics; Bisulfite sequencing; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001626506,0.0001000802,0.0001366805,0.00001583105,0.00004456074,0.000004710654,0.00006640117,0.00004635209,0.0001060984],"category_scores_gemma":[0.0000149575,0.00003412474,0.00001911958,0.00006447068,0.0000125575,0.00004266332,0.00003714974,0.00002651726,0.00001851265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004960576,"about_ca_system_score_gemma":0.000002938506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004182633,"about_ca_topic_score_gemma":0.00008497733,"domain_scores_codex":[0.9991258,0.0000851507,0.0001995743,0.0002127973,0.0002283113,0.0001484174],"domain_scores_gemma":[0.9995173,0.0002442324,0.000142213,0.00003859193,0.000008265304,0.00004939595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004234778,0.00008908815,0.01871831,0.000002067824,0.000006296158,0.00000211321,0.000325931,0.00008619135,0.9791506,0.000001390717,0.00002513184,0.001550548],"study_design_scores_gemma":[0.0001874947,0.0001117626,0.5462624,0.00002888284,0.000006335935,3.524418e-7,0.00008136802,0.000005407199,0.453,0.000009677082,0.0002360128,0.00007030179],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980141,0.00003040522,0.001047712,0.0002267899,0.00002450025,0.0002200801,0.0002854709,0.00001055196,0.0001404027],"genre_scores_gemma":[0.9992621,0.0001296192,0.0002254728,0.00005278857,0.00002065318,0.00002820502,0.0001148454,9.26807e-7,0.0001653791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.527544,"threshold_uncertainty_score":0.1391566,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01606558257326718,"score_gpt":0.1801945513877887,"score_spread":0.1641289688145215,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}