{"id":"W2509259734","doi":"10.1038/srep32512","title":"Fine scale mapping of the 17q22 breast cancer locus using dense SNPs, genotyped within the Collaborative Oncological Gene-Environment Study (COGs)","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Royal Victoria Hospital; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Université Laval; Centre hospitalier universitaire de Québec","funders":"Medical Research and Materiel Command; Institute of Biomedical Sciences, Academia Sinica; Biomedical Research Council; Medical Research Council; U.S. Army; National Institutes of Health; Ministero dello Sviluppo Economico; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Centers for Disease Control and Prevention; Institut National Du Cancer; National Health and Medical Research Council; Oulun Yliopisto; Deutsche Krebshilfe; Medizinischen Hochschule Hannover; Norges Forskningsråd; KWF Kankerbestrijding; Associazione Italiana per la Ricerca sul Cancro; Ministry of Public Health; Ligue Contre le Cancer; Karolinska Institutet; Instituto de Salud Carlos III; National Research Foundation of Korea; National Medical Research Council; Ministério da Ciência, Tecnologia e Inovação; Ministry of Education, Science and Technology; Ministry of Education, Culture, Sports, Science and Technology; Ovarian Cancer Research Fund; Bundesministerium für Bildung und Forschung; Ministerio de Economía y Competitividad; Canadian Institutes of Health Research; General Secretariat for Research and Technology; Robert Bosch Stiftung; Kementerian Sains, Teknologi dan Inovasi; King's College London; Academy of Finland; Agence Nationale de la Recherche; Cancer Council South Australia; Fonds Wetenschappelijk Onderzoek; Cancerfonden; Stockholms Läns Landsting; Singapore Eye Research Institute; National Cancer Institute; Cancer Institute NSW; National Breast Cancer Foundation; European Commission; Kuopion Yliopistollinen Sairaala; Academia Sinica; National Research Foundation; National Institute for Health and Care Research; Breast Cancer Research Trust; Fondation du cancer du sein du Québec; Itä-Suomen Yliopisto; Ministère du Développement Économique, de l’Innovation et de l’Exportation; Lon V. Smith Foundation; European Social Fund; Agency for Science, Technology and Research; Cancer Council Tasmania; World Health Organization; Francis Crick Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Deutsche Gesetzliche Unfallversicherung; Kreftforeningen; David F. and Margaret T. Grohne Family Foundation; Breast Cancer Research Foundation; McGill University; Japan Agency for Medical Research and Development; Deutsches Krebsforschungszentrum; Herlev Hospital; Cancer Research UK; Cancer Council NSW; Susan G. Komen for the Cure; Virginia Department of Health; Taiwan Biobank; Cancer Council Victoria; California Department of Public Health; Sundhed og Sygdom, Det Frie Forskningsråd; Fondation de France; California Breast Cancer Research Program; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; U.S. Department of Health and Human Services; University of Cambridge; Helsingin ja Uudenmaan Sairaanhoitopiiri","keywords":"Single-nucleotide polymorphism; Breast cancer; Locus (genetics); Genetics; Biology; Gene; Computational biology; Bioinformatics; Cancer; Medicine; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008026634,0.0001369449,0.0001545469,0.0000243898,0.0003189394,0.00005385435,0.0002160402,0.00006950961,0.00005335137],"category_scores_gemma":[0.00009285731,0.00006708802,0.00007930583,0.0002079371,0.0004831608,0.000004244317,0.000340021,0.0000552299,0.000001865067],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009476807,"about_ca_system_score_gemma":0.0003826093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001054291,"about_ca_topic_score_gemma":0.0007094815,"domain_scores_codex":[0.9984455,0.0001012212,0.0004055098,0.0005465245,0.0002990966,0.0002021721],"domain_scores_gemma":[0.9984735,0.00002515111,0.0004264758,0.0008470584,0.0001672195,0.00006056131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004683444,0.0001804515,0.07154164,0.000004002077,0.00006269211,0.00002600032,0.0003134639,0.001670011,0.9229559,0.000004820569,0.001585558,0.001608641],"study_design_scores_gemma":[0.001097221,0.000251141,0.1532667,0.00007073181,0.0001968084,0.00033783,0.001304268,0.0001112008,0.8197986,0.0007448383,0.02231307,0.0005075667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960535,0.0005624266,0.0003009103,0.0003594939,0.001895746,0.0006895806,0.00006926056,0.00000365252,0.00006549933],"genre_scores_gemma":[0.9988083,0.00003336693,0.0001687904,0.00004757464,0.0001469724,0.00005610073,0.000005485369,0.00001275793,0.0007206914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1031573,"threshold_uncertainty_score":0.273577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01454150940924528,"score_gpt":0.2498921715472877,"score_spread":0.2353506621380425,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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