{"id":"W2509259734","doi":"10.1038/srep32512","title":"Fine scale mapping of the 17q22 breast cancer locus using dense SNPs, genotyped within the Collaborative Oncological Gene-Environment Study (COGs)","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Royal Victoria Hospital; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Université Laval; Centre hospitalier universitaire de Québec","funders":"Medical Research and Materiel Command; Institute of Biomedical Sciences, Academia Sinica; Biomedical Research Council; Medical Research Council; U.S. Army; National Institutes of Health; Ministero dello Sviluppo Economico; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Centers for Disease Control and Prevention; Institut National Du Cancer; National Health and Medical Research Council; Oulun Yliopisto; Deutsche Krebshilfe; Medizinischen Hochschule Hannover; Norges Forskningsråd; KWF Kankerbestrijding; Associazione Italiana per la Ricerca sul Cancro; Ministry of Public Health; Ligue Contre le Cancer; Karolinska Institutet; Instituto de Salud Carlos III; National Research Foundation of Korea; National Medical Research Council; Ministério da Ciência, Tecnologia e Inovação; Ministry of Education, Science and Technology; Ministry of Education, Culture, Sports, Science and Technology; Ovarian Cancer Research Fund; Bundesministerium für Bildung und Forschung; Ministerio de Economía y Competitividad; Canadian Institutes of Health Research; General Secretariat for Research and Technology; Robert Bosch Stiftung; Kementerian Sains, Teknologi dan Inovasi; King's College London; Academy of Finland; Agence Nationale de la Recherche; Cancer Council South Australia; Fonds Wetenschappelijk Onderzoek; Cancerfonden; Stockholms Läns Landsting; Singapore Eye Research Institute; National Cancer Institute; Cancer Institute NSW; National Breast Cancer Foundation; European Commission; Kuopion Yliopistollinen Sairaala; Academia Sinica; National Research Foundation; National Institute for Health and Care Research; Breast Cancer Research Trust; Fondation du cancer du sein du Québec; Itä-Suomen Yliopisto; Ministère du Développement Économique, de l’Innovation et de l’Exportation; Lon V. Smith Foundation; European Social Fund; Agency for Science, Technology and Research; Cancer Council Tasmania; World Health Organization; Francis Crick Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Deutsche Gesetzliche Unfallversicherung; Kreftforeningen; David F. and Margaret T. Grohne Family Foundation; Breast Cancer Research Foundation; McGill University; Japan Agency for Medical Research and Development; Deutsches Krebsforschungszentrum; Herlev Hospital; Cancer Research UK; Cancer Council NSW; Susan G. Komen for the Cure; Virginia Department of Health; Taiwan Biobank; Cancer Council Victoria; California Department of Public Health; Sundhed og Sygdom, Det Frie Forskningsråd; Fondation de France; California Breast Cancer Research Program; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; U.S. Department of Health and Human Services; University of Cambridge; Helsingin ja Uudenmaan Sairaanhoitopiiri","keywords":"Single-nucleotide polymorphism; Breast cancer; Locus (genetics); Genetics; Biology; Gene; Computational biology; Bioinformatics; Cancer; Medicine; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001328547,0.0004933602,0.0006848792,0.00121555,0.0005177411,0.000602421,0.0003852377,0.0004067483,0.001902242],"category_scores_gemma":[0.002780369,0.000346751,0.0007197044,0.001887685,0.0004590505,0.00009814347,0.0010008,0.0004858785,0.0003458307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003236962,"about_ca_system_score_gemma":0.000555033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01101714,"about_ca_topic_score_gemma":0.02135236,"domain_scores_codex":[0.9991555,0.0002037499,0.00004144866,0.0003549919,0.0001454061,0.00009883071],"domain_scores_gemma":[0.9990088,0.0003296702,0.0002502713,0.0002345174,0.00006463753,0.0001120503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001575583,0.0001243675,0.8971688,0.0001236693,0.001608026,0.001760631,0.0005409374,0.002676053,0.05940665,0.0009070861,0.001618583,0.03248968],"study_design_scores_gemma":[0.0002461603,0.0002521401,0.9890283,0.0000218422,0.0003914033,0.001199988,0.00008785297,0.001346332,0.002699231,0.000654665,0.004055174,0.00001685219],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901074,0.000924799,0.004813916,0.0001124923,0.00001985384,0.0001097991,0.002641106,0.00007190596,0.001198742],"genre_scores_gemma":[0.9871281,0.0004913983,0.007576235,0.00009996969,0.00003120081,0.0001530208,0.003601805,0.00003077907,0.0008874587],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01101714,"threshold_uncertainty_score":0.02190602,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01454150940924528,"score_gpt":0.2498921715472877,"score_spread":0.2353506621380425,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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