{"id":"W2509725184","doi":"10.1139/gen-2016-0053","title":"Genomic study of the Type IVC secretion system in <i>Clostridium difficile</i>: understanding <i>C. difficile</i> evolution via horizontal gene transfer","year":2016,"lang":"en","type":"article","venue":"Genome","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Biology; Clostridium difficile; Horizontal gene transfer; Genome; Genomic island; Genetics; Ribotyping; Transposable element; Population; Gene; Mobile genetic elements; Microbiology; Polymerase chain reaction; Antibiotics; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001159237,0.0002017203,0.0002838885,0.0008485565,0.000243712,0.0004435615,0.0002470368,0.000402722,0.0005667334],"category_scores_gemma":[0.0004128249,0.0001301108,0.000440567,0.001141267,0.0001586836,0.0003214494,0.0002197876,0.0003812686,0.0002361171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003997282,"about_ca_system_score_gemma":0.0004551582,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004043485,"about_ca_topic_score_gemma":0.003142188,"domain_scores_codex":[0.9998971,0.000009861204,0.000008509431,0.00003609388,0.00002224833,0.00002611976],"domain_scores_gemma":[0.9998155,0.0000316419,0.00007258337,0.000009990046,0.00003431583,0.00003597808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004497365,0.0001024033,0.02832698,0.0005237456,0.00004419854,0.0006449082,0.0003544004,0.000620792,0.944019,0.00077392,0.0003736318,0.02376629],"study_design_scores_gemma":[0.00005375518,0.0009417281,0.7443708,0.0002403036,0.0004530996,0.004081422,0.001682996,0.005396354,0.1988583,0.001334892,0.04251434,0.00007204553],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9822357,0.005897295,0.00647955,0.0003150136,0.00003199868,0.00006066504,0.002758433,0.00004815431,0.002173369],"genre_scores_gemma":[0.9787828,0.003175088,0.009873248,0.0002301979,0.00004075358,0.00002364402,0.006936665,0.00001638226,0.0009213095],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004043485,"threshold_uncertainty_score":0.008039892,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02861638825024963,"score_gpt":0.2479660797853181,"score_spread":0.2193496915350685,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}