{"id":"W2510106332","doi":"10.1093/nar/gkw733","title":"Alternative splicing of<i>U2AF1</i>reveals a shared repression mechanism for duplicated exons","year":2016,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Blood Cancer UK; University of Southampton; Institut National de la Santé et de la Recherche Médicale; York University; University of Cambridge; Cold Spring Harbor Laboratory","keywords":"Biology; Exon; Genetics; Polypyrimidine tract; Tandem exon duplication; Intron; RNA splicing; Exon trapping; Exon shuffling; Alternative splicing; Ribonucleoprotein; Gene; RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001156894,0.0001784882,0.0001229738,0.0001642935,0.0001947569,0.0003214632,0.0002481489,0.0002044839,0.000663385],"category_scores_gemma":[0.0001848193,0.0001434438,0.0001755105,0.0001230582,0.0002105678,0.0001859268,0.0001882783,0.0003144895,0.0004031786],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003449893,"about_ca_system_score_gemma":0.0001152341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004689088,"about_ca_topic_score_gemma":0.0008332998,"domain_scores_codex":[0.9998784,0.00001505549,0.000006013005,0.00004480124,0.00003066593,0.00002516724],"domain_scores_gemma":[0.999835,0.00002658696,0.00005561359,0.00003310635,0.00001540202,0.00003420316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004950449,0.000005224521,0.0006471286,0.000005448463,0.000002320073,0.00005039165,0.00001799898,0.00003636407,0.9976075,0.0002827825,0.00002002783,0.001275361],"study_design_scores_gemma":[0.000008196685,0.0001309325,0.02459187,0.000006656897,0.00001365968,0.0007820296,0.00004925799,0.002564022,0.9682428,0.0003985026,0.003201167,0.00001102742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964365,0.0001932294,0.00245371,0.00002049391,0.000005265128,0.000003106227,0.00005914983,0.000048455,0.000780144],"genre_scores_gemma":[0.9975541,0.00004420696,0.00149681,0.00002322821,0.00000542167,0.000004310948,0.0002360049,0.00001749083,0.0006183357],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000663385,"threshold_uncertainty_score":0.002503097,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05557079674393945,"score_gpt":0.3703337722812413,"score_spread":0.3147629755373018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}