{"id":"W2510962849","doi":"10.1128/msphere.00199-16","title":"Extreme Dysbiosis of the Microbiome in Critical Illness","year":2016,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":422,"is_retracted":false,"has_abstract":true,"ca_institutions":"Southlake Regional Health Center; Kingston General Hospital; Clinical Evaluation Research Unit; Queen's University","funders":"","keywords":"Dysbiosis; Microbiome; Medicine; Intensive care medicine; Critical illness; Sepsis; Disease; Critically ill; Immunology; Bioinformatics; Internal medicine; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006783798,0.0003218855,0.0003110989,0.0007278187,0.0005441644,0.0007250016,0.0002416794,0.0003014414,0.000722196],"category_scores_gemma":[0.001272792,0.000168814,0.0001898171,0.00066486,0.0005788637,0.0004623902,0.000797849,0.0006591565,0.0001673994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005128622,"about_ca_system_score_gemma":0.0009087352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00697418,"about_ca_topic_score_gemma":0.014455,"domain_scores_codex":[0.9996175,0.000112722,0.00002021304,0.0000818167,0.00009416515,0.0000735364],"domain_scores_gemma":[0.9994233,0.0001237078,0.0001491502,0.00006471865,0.0001014178,0.0001378254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001522008,0.0002362372,0.7463278,0.0003737966,0.00007953789,0.0002871007,0.0006015037,0.0005423864,0.1514488,0.0002779605,0.0007061751,0.09759675],"study_design_scores_gemma":[0.000008043617,0.0002670466,0.9883009,0.00005251855,0.00002651106,0.0004261415,0.0003737427,0.0006055542,0.00809939,0.0003467699,0.001476945,0.00001652517],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887473,0.005131669,0.002988393,0.0006078655,0.00003083594,0.0000864582,0.0005010605,0.00005134505,0.001855036],"genre_scores_gemma":[0.9911356,0.002008229,0.005781471,0.0003142744,0.00003651379,0.00003306292,0.0003924443,0.00001548876,0.0002828044],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00697418,"threshold_uncertainty_score":0.0138672,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01815392225488953,"score_gpt":0.2764949230130806,"score_spread":0.2583410007581911,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}