{"id":"W2513049377","doi":"10.1038/ncomms12506","title":"Human TRAV1-2-negative MR1-restricted T cells detect S. pyogenes and alternatives to MAIT riboflavin-based antigens","year":2016,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":123,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"T-cell receptor; Antigen; clone (Java method); Biology; Streptococcus pyogenes; T cell; Microbiology; Cell biology; Genetics; Gene; Bacteria; Staphylococcus aureus; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001146124,0.0002589207,0.0002434294,0.000193257,0.0001428079,0.0004733548,0.0001549478,0.0003514121,0.002789614],"category_scores_gemma":[0.0002409184,0.0001464965,0.0001890469,0.0001227015,0.0001715226,0.0002084693,0.0001690206,0.0004381227,0.0006426479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001696573,"about_ca_system_score_gemma":0.0001311563,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004640421,"about_ca_topic_score_gemma":0.0005389726,"domain_scores_codex":[0.9998232,0.00002446762,0.00001616741,0.00004816392,0.00002796167,0.00005996692],"domain_scores_gemma":[0.999832,0.00004456917,0.00003541837,0.00003802809,0.00002021842,0.00002965826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001117776,0.000009649685,0.000644473,0.00001183271,0.000001846624,0.00005917918,0.00002292857,0.00002570902,0.9982456,0.0000443196,0.00001196012,0.0008107552],"study_design_scores_gemma":[0.00004849291,0.0007812057,0.02055114,0.00001521536,0.00003094745,0.003063695,0.0001155529,0.0009124104,0.9719681,0.0001447224,0.00235772,0.00001074525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997946,0.0003355323,0.0005432095,0.00001891168,0.000004174696,0.000007254303,0.0000732507,0.00002331336,0.001048427],"genre_scores_gemma":[0.9978587,0.0001489801,0.0006633976,0.00001897159,0.000007289687,0.000008971823,0.0002092199,0.000009266636,0.001075168],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002789614,"threshold_uncertainty_score":0.00933218,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01672623654614151,"score_gpt":0.2889801811121387,"score_spread":0.2722539445659972,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}