{"id":"W2513475982","doi":"10.1128/jvi.01215-16","title":"Lineage-Specific Differences between the gp120 Inner Domain Layer 3 of Human Immunodeficiency Virus and That of Simian Immunodeficiency Virus","year":2016,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Biology; Virology; Simian immunodeficiency virus; Human immunodeficiency virus (HIV); Virus; Lineage (genetic); Immunodeficiency; Simian; Genetics; Gene; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009259042,0.0001473445,0.00005141931,0.0001439175,0.0001446264,0.0001914214,0.0001452526,0.0001504338,0.0004777027],"category_scores_gemma":[0.0001884261,0.00008357116,0.0001746216,0.00008226824,0.00012163,0.000152974,0.0002059169,0.0002172766,0.00009546196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002400144,"about_ca_system_score_gemma":0.0001861423,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009832442,"about_ca_topic_score_gemma":0.001374149,"domain_scores_codex":[0.9999446,0.0000103924,0.000005647135,0.000009078737,0.00001347621,0.00001683897],"domain_scores_gemma":[0.9999219,0.00001054867,0.00003115454,0.000006920719,0.000009124048,0.00002034058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001323071,0.00001125529,0.006762326,0.00002510725,0.000007956497,0.000113176,0.00007651524,0.0000713327,0.9906836,0.000288051,0.00002192345,0.00180662],"study_design_scores_gemma":[0.00002114343,0.0004978516,0.3293675,0.00004413264,0.00007612591,0.003154441,0.0003744123,0.002251404,0.6557135,0.0006154247,0.007863215,0.0000209182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985809,0.000336305,0.0005691535,0.000008962251,0.000002641612,0.000006807881,0.00006359592,0.000004766157,0.0004269272],"genre_scores_gemma":[0.9980977,0.0002344292,0.001097745,0.00002772129,0.000001575356,0.000009895904,0.000198008,0.000004074597,0.0003289075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009832442,"threshold_uncertainty_score":0.001955032,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03938461503882758,"score_gpt":0.2828057950203183,"score_spread":0.2434211799814907,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}