{"id":"W2513796423","doi":"10.1101/pdb.top080945","title":"Functional Genomics Using the <i>Saccharomyces cerevisiae</i> Yeast Deletion Collections","year":2016,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute for Health and Care Research","keywords":"Genetics; Saccharomyces cerevisiae; Genome; Biology; Gene; Computational biology; Functional genomics; Open reading frame; Homologous recombination; Genomics; Yeast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000253958,0.0001362887,0.00009739556,0.000044945,0.0003763634,0.00009419917,0.0002423896,0.00008201729,0.00008481188],"category_scores_gemma":[0.00007032273,0.00008762847,0.00008982693,0.0001742554,0.0001022232,0.000006178381,0.0001735907,0.00009055745,0.00003982677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006376802,"about_ca_system_score_gemma":0.0002381364,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001375742,"about_ca_topic_score_gemma":0.000009927691,"domain_scores_codex":[0.9989308,0.00007284935,0.0001886989,0.0003152622,0.0002050084,0.0002874236],"domain_scores_gemma":[0.999274,0.00001792442,0.00007241072,0.0003881419,0.000159965,0.0000876069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008197551,0.00003739193,0.001255203,0.00001745438,0.00002976326,9.217758e-7,0.000002215915,0.00008920772,0.9962109,0.0005272423,0.001517664,0.0002300083],"study_design_scores_gemma":[0.0004806579,0.000108333,0.001505408,0.00005001885,0.000007370576,0.000004093561,0.000004554296,0.0001195349,0.7133696,0.00001657657,0.2841978,0.0001360265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.883745,0.0006652976,0.05529075,0.001551379,0.0004292451,0.05675366,0.0001363009,0.00009638966,0.001332004],"genre_scores_gemma":[0.9669862,0.00007723435,0.0014327,0.0001770484,0.00107002,0.02710387,0.000002364003,0.00005805413,0.003092471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2828413,"threshold_uncertainty_score":0.3573385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03567933422396503,"score_gpt":0.2860715855538821,"score_spread":0.2503922513299171,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}