{"id":"W2513832519","doi":"10.1186/s12864-016-2916-7","title":"Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Ministry of Agriculture and Forestry; Agriculture Food and Rural Development; University of Alberta","funders":"Alberta Agriculture and Forestry","keywords":"Brachypodium; Biology; Brachypodium distachyon; Arabidopsis; Promoter; Vernalization; Hordeum vulgare; Genetics; DNA binding site; Gene; Genome; Gene expression; Botany; Mutant; Poaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003176726,0.0004176348,0.000433098,0.0009013214,0.0002078447,0.0002578945,0.0002602634,0.000281728,0.001727952],"category_scores_gemma":[0.0003292817,0.0001354484,0.0007438131,0.0004183632,0.0001253117,0.000148383,0.00014713,0.0002503135,0.0005286718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002746473,"about_ca_system_score_gemma":0.0002892825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000968457,"about_ca_topic_score_gemma":0.00175694,"domain_scores_codex":[0.9999003,0.00001463026,0.000006599071,0.00004341991,0.0000205526,0.00001452411],"domain_scores_gemma":[0.9998291,0.0000669522,0.00004279979,0.000007815082,0.00002009643,0.00003323725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002277628,0.0002242378,0.05499728,0.001167591,0.0002127942,0.001074825,0.0003453855,0.008989884,0.894453,0.0004474449,0.002577299,0.03323257],"study_design_scores_gemma":[0.0004955232,0.001674086,0.5299762,0.0002338664,0.0008682196,0.002651705,0.0007177778,0.2543344,0.1903276,0.001239025,0.01735919,0.0001224778],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9727778,0.001144908,0.01565263,0.0001040824,0.00002033871,0.00008007645,0.008417854,0.0009731938,0.0008292782],"genre_scores_gemma":[0.9538235,0.0002926671,0.02486994,0.00007439173,0.00001271865,0.0001081452,0.02012324,0.0001162537,0.0005791096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001727952,"threshold_uncertainty_score":0.005780518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0696438650998384,"score_gpt":0.2475853850420284,"score_spread":0.17794151994219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}