{"id":"W2514285416","doi":"10.1101/gr.203711.115","title":"Indels, structural variation, and recombination drive genomic diversity in <i>Plasmodium falciparum</i>","year":2016,"lang":"en","type":"article","venue":"Genome Research","topic":"Malaria Research and Control","field":"Medicine","cited_by":270,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome; Medical Research Council; National Institutes of Health; NHLBI Division of Intramural Research; Wellcome Trust; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Biology; Indel; Genetics; Genome; Single-nucleotide polymorphism; Genome evolution; SNP; Evolutionary biology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003016358,0.0001501299,0.0002608247,0.0007549925,0.0002851376,0.0004564688,0.0002278653,0.0002847011,0.0008291419],"category_scores_gemma":[0.001042855,0.0002232993,0.0001540497,0.0007356205,0.0003918619,0.0002837416,0.0003562609,0.0004730852,0.0002442026],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001749405,"about_ca_system_score_gemma":0.0001417914,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005776695,"about_ca_topic_score_gemma":0.001414599,"domain_scores_codex":[0.9997172,0.00005020123,0.0000146549,0.0001009743,0.00008274219,0.00003421837],"domain_scores_gemma":[0.9993231,0.0002069662,0.0002816203,0.00007316399,0.00005459017,0.00006058732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003575682,0.00005083429,0.06359914,0.0001838391,0.0001034555,0.0004805571,0.0003271179,0.002105497,0.9035096,0.001436999,0.0002311465,0.02761421],"study_design_scores_gemma":[0.00002938643,0.0003376639,0.8422107,0.00003690542,0.0001446166,0.003574645,0.0003258462,0.008663049,0.1333218,0.004200887,0.007094607,0.0000598419],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910235,0.0007973431,0.005990791,0.00008347792,0.000007502574,0.00001626635,0.0004320456,0.00008900792,0.001559892],"genre_scores_gemma":[0.9946246,0.000334399,0.004159483,0.00006572386,0.00001548382,0.00001167534,0.0003677926,0.00003219046,0.0003885154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008291419,"threshold_uncertainty_score":0.002773702,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05096544830822649,"score_gpt":0.3246253717406567,"score_spread":0.2736599234324302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}