{"id":"W2514285416","doi":"10.1101/gr.203711.115","title":"Indels, structural variation, and recombination drive genomic diversity in <i>Plasmodium falciparum</i>","year":2016,"lang":"en","type":"article","venue":"Genome Research","topic":"Malaria Research and Control","field":"Medicine","cited_by":270,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome; Medical Research Council; National Institutes of Health; NHLBI Division of Intramural Research; Wellcome Trust; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Biology; Indel; Genetics; Genome; Single-nucleotide polymorphism; Genome evolution; SNP; Evolutionary biology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001711841,0.0001015064,0.0002056579,0.0005169034,0.0002804214,0.00004120271,0.0001885718,0.0001155481,0.0004154658],"category_scores_gemma":[0.0004165979,0.00007305311,0.00003358802,0.0003571419,0.0001557698,0.0001711364,0.0005446394,0.0003742779,0.0001157067],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004608,"about_ca_system_score_gemma":0.0002577274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005773478,"about_ca_topic_score_gemma":0.0001408801,"domain_scores_codex":[0.9978138,0.0003067807,0.0001931598,0.0003745394,0.0006938881,0.000617791],"domain_scores_gemma":[0.998807,0.0002542745,0.00003179099,0.0002697007,0.000361937,0.0002753394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003624313,0.0002653599,0.4928066,0.0002414475,0.0002398797,0.0002687711,0.004993255,0.000008025108,0.4177363,0.0197743,0.0008660916,0.05917568],"study_design_scores_gemma":[0.004229675,0.0003268116,0.985658,0.00002666545,0.000007288833,0.00001734941,0.00009566111,0.0002514259,0.0002791823,0.008339666,0.0006737225,0.00009452677],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9857277,0.0002552461,0.0002672928,0.0111715,0.00004614349,0.0007810316,0.00002220822,0.00002069876,0.001708158],"genre_scores_gemma":[0.997476,0.0002912811,0.0001429844,0.00005475547,0.00009406273,0.0000333821,0.00001343032,0.00001197769,0.001882083],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4928514,"threshold_uncertainty_score":0.454906,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05096544830822649,"score_gpt":0.3246253717406567,"score_spread":0.2736599234324302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}