{"id":"W2514555320","doi":"10.1093/gbe/evw206","title":"Evolutionary Dynamics of Chloroplast Genomes in Low Light: A Case Study of the Endolithic Green Alga Ostreobium quekettii","year":2016,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Egg Farmers of Canada","keywords":"Biology; Genome; Ulvophyceae; Evolutionary biology; Phylogenetic tree; Chloroplast; Genome evolution; Phylogenetics; Photosynthesis; Gene; Genetics; Chlorophyta; Algae; Botany","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002696182,0.0001079964,0.0002046008,0.00004861952,0.0001618276,6.97736e-7,0.0002099143,0.0001721896,0.0002583911],"category_scores_gemma":[0.00002674079,0.00006780862,0.00003269667,0.0001829901,0.0006082302,0.00006024733,0.000387846,0.0001439171,0.00001309945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001673564,"about_ca_system_score_gemma":0.00002584012,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005244175,"about_ca_topic_score_gemma":0.03789959,"domain_scores_codex":[0.9987813,0.0004981032,0.0002758427,0.0002041654,0.00003643106,0.0002041287],"domain_scores_gemma":[0.9994096,0.0001133169,0.0001510822,0.0002838352,0.00001388314,0.00002825581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001016625,0.0003119484,0.9199924,0.0000135352,0.00002399941,0.000009258953,0.00118565,0.00005023567,0.07722074,0.0004396905,0.00001988475,0.0006310345],"study_design_scores_gemma":[0.0006664508,0.0005041743,0.9945224,0.00001094774,0.00001555169,0.0002058098,0.0009389103,0.00008676029,0.0001023162,0.00273198,0.000117388,0.0000973037],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988582,0.0001985268,0.00003338325,0.0002880957,0.0001105757,0.0002729981,0.00005250528,0.000006186538,0.0001795961],"genre_scores_gemma":[0.9997679,0.00003621776,0.00001682105,0.00002358135,0.00001691026,0.00001205539,0.000009110078,0.00000423237,0.0001131942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07711843,"threshold_uncertainty_score":0.9796562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006978349160778531,"score_gpt":0.2093551408430696,"score_spread":0.2023767916822911,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}