{"id":"W2516114605","doi":"10.1128/cmr.00056-16","title":"Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing","year":2016,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":149,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada","funders":"","keywords":"Subtyping; Whole genome sequencing; Biology; Computational biology; Metagenomics; Genome; Context (archaeology); Genomics; Genetics; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008337027,0.0006839839,0.001239424,0.002030609,0.0003771711,0.003327866,0.001101858,0.002283246,0.00129219],"category_scores_gemma":[0.008325922,0.0004287558,0.0007974439,0.002116294,0.001308543,0.004726323,0.002092678,0.003166491,0.0008138779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009972203,"about_ca_system_score_gemma":0.002502924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001812026,"about_ca_topic_score_gemma":0.0018614,"domain_scores_codex":[0.9973037,0.001072906,0.0002253077,0.0004112103,0.0008289732,0.000157856],"domain_scores_gemma":[0.9928505,0.003901902,0.000728631,0.0003653569,0.001810876,0.0003427337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001972033,0.00007383723,0.007123579,0.01663653,0.0003645125,0.0009400072,0.001747995,0.002569573,0.03251018,0.01873469,0.03570023,0.8834018],"study_design_scores_gemma":[0.00001742145,0.0001716278,0.006859767,0.006179339,0.0002827029,0.001274551,0.001350715,0.001901517,0.009607602,0.02983198,0.9424093,0.0001134917],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01027511,0.9166818,0.0449057,0.01840469,0.001878165,0.00007044331,0.000655959,0.0005992298,0.006528893],"genre_scores_gemma":[0.03892744,0.866827,0.07869254,0.009510571,0.001647789,0.0001448347,0.001776836,0.0002305339,0.002242421],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.008337027,"threshold_uncertainty_score":0.04409093,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1262161104789874,"score_gpt":0.4082502151287851,"score_spread":0.2820341046497977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}