{"id":"W2517626897","doi":"10.1016/j.chom.2016.07.015","title":"Single-Cell Characterization of Viral Translation-Competent Reservoirs in HIV-Infected Individuals","year":2016,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":195,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"National Heart, Lung, and Blood Institute; Fonds de Recherche du Québec - Santé; Canada Foundation for Innovation; National Institute of Allergy and Infectious Diseases; Delaney AIDS Research Enterprise; National Institutes of Health; Canadian Institutes of Health Research; McGill University Health Centre; amfAR, The Foundation for AIDS Research","keywords":"Biology; Virology; Translation (biology); Human immunodeficiency virus (HIV); Cell; Computational biology; Genetics; Gene; Messenger RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000167973,0.000180244,0.0002757579,0.0002353163,0.00006447687,0.00001103089,0.0001932898,0.0001933521,0.0009758608],"category_scores_gemma":[0.00001753542,0.0001326631,0.00008827195,0.0001836109,0.0001540445,0.0001272462,0.00005600023,0.0001382789,0.001463535],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007770204,"about_ca_system_score_gemma":0.00007682261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000437493,"about_ca_topic_score_gemma":0.00002994735,"domain_scores_codex":[0.9985945,0.000241371,0.0003916926,0.0002971762,0.00005045846,0.0004248057],"domain_scores_gemma":[0.9993472,0.0001427715,0.0001388473,0.0002670331,0.00006891522,0.00003522383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001078178,0.0007266933,0.03851245,0.00003347536,0.00003452259,0.000006136604,0.0005180332,2.867383e-7,0.9573677,0.0000120199,0.0002572233,0.002423663],"study_design_scores_gemma":[0.003879952,0.0002705602,0.05480777,0.00007217222,0.00001773463,0.000004346297,0.00002771382,3.066521e-7,0.9178593,0.000009516117,0.02291069,0.0001399174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960036,0.0006961359,0.0002270245,0.0003653824,0.0001270088,0.0004300767,0.0006036918,0.00003451316,0.001512546],"genre_scores_gemma":[0.9950317,0.0001510237,0.000117433,0.00002599219,0.00001306531,0.00002494014,0.001152134,0.00002081242,0.003462971],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03950835,"threshold_uncertainty_score":0.9999374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01521651078714495,"score_gpt":0.2255965353572175,"score_spread":0.2103800245700726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}