{"id":"W2519167944","doi":"10.1371/journal.pone.0163059","title":"Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Genome British Columbia; BC Cancer Foundation; Genome Canada","keywords":"Genome; Sequence assembly; Biology; Illumina dye sequencing; DNA sequencing; Genomics; Whole genome sequencing; Reference genome; Comparative genomics; Chloroplast DNA; Computational biology; Chloroplast; Genetics; Inverted repeat; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005072245,0.0005544189,0.0006376101,0.0006072486,0.0004642551,0.0006949741,0.0003931895,0.0003945382,0.002297684],"category_scores_gemma":[0.0006446719,0.0003989686,0.0008786328,0.000840452,0.0002375798,0.0003756593,0.0004271438,0.0009901456,0.001866825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004988294,"about_ca_system_score_gemma":0.001005746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003196459,"about_ca_topic_score_gemma":0.007566316,"domain_scores_codex":[0.9997712,0.00002750703,0.00001700497,0.00009408169,0.0000588445,0.00003134736],"domain_scores_gemma":[0.9997227,0.00005197866,0.00005011249,0.00005688045,0.00008178475,0.00003661193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003718056,0.00005303949,0.001314972,0.0002595735,0.00004099931,0.0002115871,0.0002853455,0.001245535,0.9762707,0.0007005748,0.0008214686,0.01842444],"study_design_scores_gemma":[0.0001267499,0.0009382645,0.06095007,0.0001532573,0.0002320961,0.0009188228,0.0004227182,0.01867205,0.8188549,0.002329263,0.09628757,0.0001142191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6216113,0.001567093,0.3223937,0.0002842901,0.0002463322,0.0006525662,0.04024186,0.00583235,0.007170497],"genre_scores_gemma":[0.3380003,0.001496834,0.4781267,0.0003130022,0.00006005281,0.0005696011,0.1664193,0.00177881,0.01323545],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003196459,"threshold_uncertainty_score":0.007686496,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1193918114091477,"score_gpt":0.2453464119905148,"score_spread":0.1259546005813671,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}