{"id":"W2520228482","doi":"10.1101/gr.193649.115","title":"Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia","year":2016,"lang":"en","type":"article","venue":"Genome Research","topic":"Acute Lymphoblastic Leukemia research","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Lastentautien Tutkimussäätiö; Vetenskapsrådet; Jane ja Aatos Erkon Säätiö; Tays; Suomen Kulttuurirahasto; Academy of Finland; Cancerfonden; Svenska Forskningsrådet Formas","keywords":"Biology; Enhancer; RUNX1; ETV6; Fusion gene; Gene; Genetics; Psychological repression; Genome; Regulation of gene expression; Transcription factor; Gene expression; Chromosomal translocation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001601897,0.0001713861,0.0003144281,0.0003453908,0.0001402752,0.0002750184,0.0001405369,0.0001794306,0.0008693397],"category_scores_gemma":[0.0001223376,0.000164625,0.0002456635,0.0003677578,0.0001798823,0.00009498941,0.000273977,0.0002942488,0.0002146938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002155006,"about_ca_system_score_gemma":0.0001248489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006972456,"about_ca_topic_score_gemma":0.001788157,"domain_scores_codex":[0.9998611,0.0000157202,0.000007783401,0.00004884583,0.00004440192,0.00002211791],"domain_scores_gemma":[0.9999201,0.00002178275,0.00002677771,0.0000104368,0.00000718798,0.00001372953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001728036,0.00001378258,0.002465331,0.00002669327,0.00001653876,0.00004249826,0.00002606607,0.0003720027,0.9943932,0.0001048984,0.00005332917,0.002312785],"study_design_scores_gemma":[0.00006895788,0.0002662202,0.2712833,0.00001925775,0.0001410045,0.0007962519,0.0001595622,0.008691994,0.7104346,0.0004658805,0.007651472,0.0000216681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953275,0.0009300361,0.001838753,0.00003158464,0.000005841673,0.000007160092,0.001186036,0.0000715196,0.00060156],"genre_scores_gemma":[0.9937973,0.0004308357,0.001876991,0.00004870356,0.000002959969,0.00001355542,0.002727612,0.00003584927,0.001066247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008693397,"threshold_uncertainty_score":0.00290823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02864064239040007,"score_gpt":0.3293125841165261,"score_spread":0.300671941726126,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}