{"id":"W2520240868","doi":"10.1007/s11120-016-0307-1","title":"Novel insights into the origin and diversification of photosynthesis based on analyses of conserved indels in the core reaction center proteins","year":2016,"lang":"en","type":"article","venue":"Photosynthesis Research","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Indel; Biology; Acidobacteria; Genetics; Conserved sequence; Protein family; Sequence alignment; Most recent common ancestor; Gene; Peptide sequence; Evolutionary biology; Proteobacteria; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004314548,0.0003913431,0.0005048169,0.0009156312,0.0004844234,0.0005575771,0.0004467176,0.0006071927,0.001111959],"category_scores_gemma":[0.000489146,0.0001889576,0.000402895,0.0007865326,0.0004751101,0.0007362405,0.0004000362,0.001269447,0.0002834344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002775555,"about_ca_system_score_gemma":0.0003750724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004275764,"about_ca_topic_score_gemma":0.0009282026,"domain_scores_codex":[0.9998807,0.00001177497,0.000007714267,0.0000495193,0.00002871839,0.00002155784],"domain_scores_gemma":[0.9996358,0.0001435004,0.00007865874,0.00004115404,0.00003004939,0.0000708441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004709112,0.00007728577,0.009177797,0.0001479088,0.00006869162,0.0009099546,0.0002286755,0.001146446,0.9662549,0.002114498,0.0000925889,0.01931033],"study_design_scores_gemma":[0.000135136,0.0004771699,0.4706172,0.0001311444,0.0004900114,0.007165024,0.000672637,0.02293161,0.4597636,0.018389,0.01903179,0.0001957006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9795964,0.001847751,0.01592139,0.0002339861,0.00003897835,0.00002383578,0.000475894,0.0001229596,0.001738768],"genre_scores_gemma":[0.9820157,0.001205665,0.01490557,0.0001633952,0.00004700658,0.00001242038,0.0006149549,0.00004884192,0.0009864182],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001111959,"threshold_uncertainty_score":0.003719866,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1396298642611861,"score_gpt":0.3755670418834037,"score_spread":0.2359371776222176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}