{"id":"W2520485730","doi":"10.1128/genomea.00990-16","title":"Complete Genome Sequences of 17 Canadian Isolates of Salmonella enterica subsp. <i>enterica</i> Serovar Heidelberg from Human, Animal, and Food Sources","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Cegep de Saint Hyacinthe; University of Guelph; BC Centre for Disease Control; Ste. Anne's Hospital; Toronto Public Health; Public Health Agency of Canada","funders":"Government of Canada","keywords":"Salmonella enterica; Subtyping; Serotype; Biology; Plasmid; Genome; Salmonella; Microbiology; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002424795,0.0002604505,0.0005362366,0.00003781791,0.000185821,0.00002511682,0.0004734367,0.0001144123,0.0007026018],"category_scores_gemma":[0.00001685287,0.000110233,0.0001097782,0.0001893351,0.0003107204,0.0001265742,0.0001566821,0.00006353343,0.00002482688],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005308919,"about_ca_system_score_gemma":0.00002125863,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.03763561,"about_ca_topic_score_gemma":0.01872724,"domain_scores_codex":[0.9980104,0.0001401292,0.0006335085,0.0005051838,0.0001770898,0.0005337017],"domain_scores_gemma":[0.9989568,0.000155744,0.0003878645,0.0001429924,0.0001167165,0.0002398737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003304927,0.00004056324,0.1566367,0.000007714428,0.00008323106,0.000002227467,0.0001477515,7.550009e-7,0.842382,0.00001899265,0.0001075398,0.0005394625],"study_design_scores_gemma":[0.0005143917,0.002566032,0.9022897,0.00007180774,0.0000542862,0.00001136921,0.0005301468,0.000004601224,0.003234278,0.001012526,0.0892489,0.000461892],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933372,0.002079433,0.000007561043,0.0007479971,0.00006245149,0.0001991719,0.003140251,0.00002060348,0.0004053033],"genre_scores_gemma":[0.9983041,0.0005750919,0.00009763769,0.0004389538,0.0001175041,0.00001212158,0.0003290591,0.000003074587,0.0001224062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8391477,"threshold_uncertainty_score":0.9991784,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03681860470650387,"score_gpt":0.2238288203970218,"score_spread":0.1870102156905179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}