{"id":"W2520730011","doi":"","title":"Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat","year":2015,"lang":"en","type":"article","venue":"QUT ePrints (Queensland University of Technology)","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Infection and Immunity; National Health and Medical Research Council; State Government of Victoria; La Trobe University; Peter MacCallum Cancer Centre; National Breast Cancer Foundation; University of Queensland; Queensland University of Technology; University of Melbourne; Cancer Research Institute","keywords":"DNA methylation; Bisulfite sequencing; Illumina Methylation Assay; Amplicon; Bisulfite; Biology; Massive parallel sequencing; Multiplex; Computational biology; Epigenetics; Genetics; DNA sequencing; Methylation; DNA; Gene; Polymerase chain reaction; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006961036,0.001026103,0.0003692148,0.001713489,0.0004912305,0.0005927404,0.0006124168,0.0005903144,0.0134296],"category_scores_gemma":[0.001855734,0.0002061318,0.0004758802,0.002052972,0.0002098123,0.0003790048,0.0004816458,0.0005802001,0.002411925],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000372505,"about_ca_system_score_gemma":0.0003886857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002191424,"about_ca_topic_score_gemma":0.002119027,"domain_scores_codex":[0.9995516,0.00007656871,0.00005670375,0.0001482457,0.000129669,0.00003726178],"domain_scores_gemma":[0.998382,0.0007883842,0.0001871375,0.0002492266,0.0003341127,0.00005929421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.008222793,0.001038894,0.05538849,0.003040093,0.0005662611,0.00547,0.001631657,0.0564765,0.4309556,0.009123168,0.1271442,0.3009424],"study_design_scores_gemma":[0.0002714717,0.0008008081,0.04468484,0.0002119542,0.0001098931,0.002072002,0.0004161818,0.3077254,0.5384107,0.008470283,0.096615,0.000211476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.3444141,0.0004882034,0.3374574,0.0009351277,0.0004044657,0.0005630731,0.2311964,0.07540988,0.009131328],"genre_scores_gemma":[0.4015139,0.0003158805,0.4739467,0.0003780452,0.00005670819,0.001264617,0.114882,0.003196232,0.004445901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0134296,"threshold_uncertainty_score":0.0449264,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07706727103929226,"score_gpt":0.2854229598926629,"score_spread":0.2083556888533707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}