{"id":"W2521080901","doi":"10.1002/tax.596015","title":"The application of cophylogenic tools to gene sets","year":2010,"lang":"en","type":"article","venue":"Taxon","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; University of Ottawa; Agriculture and Agri-Food Canada","funders":"University of Ottawa","keywords":"Phylogenetic tree; Pairwise comparison; Inference; Phylogenetic network; Set (abstract data type); Tree (set theory); Biology; Gene; Computational biology; Phylogenetics; Evolutionary biology; Computer science; Genetics; Mathematics; Artificial intelligence; Combinatorics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008665473,0.0006182551,0.0008034459,0.005683608,0.001611712,0.002083505,0.001668057,0.0008467815,0.003650545],"category_scores_gemma":[0.05291939,0.0005680948,0.001169719,0.004005324,0.004617328,0.002709905,0.003622864,0.002915223,0.0006003919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000945229,"about_ca_system_score_gemma":0.000762352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00125956,"about_ca_topic_score_gemma":0.001019471,"domain_scores_codex":[0.993605,0.003693031,0.0003094327,0.001122727,0.001083556,0.0001864214],"domain_scores_gemma":[0.9240879,0.06251879,0.003870425,0.007417635,0.001400823,0.0007044146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0006634123,0.0002461571,0.05735829,0.0005728762,0.0006047202,0.001773816,0.003038128,0.07032359,0.0375918,0.5419016,0.004968603,0.280957],"study_design_scores_gemma":[0.00005600241,0.0001025274,0.01666448,0.00009469835,0.00008576424,0.001170937,0.0005201673,0.466467,0.01274286,0.491217,0.01079744,0.00008124852],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.08987961,0.0002585656,0.9046685,0.0003725319,0.00003247288,0.00009217515,0.0004429902,0.00127558,0.002977504],"genre_scores_gemma":[0.4820052,0.0001351731,0.5159205,0.0001370591,0.00006144218,0.0002732805,0.0006791535,0.0003131801,0.0004750667],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.008665473,"threshold_uncertainty_score":0.04582793,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01015554128469277,"score_gpt":0.2448023973801033,"score_spread":0.2346468560954106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}