{"id":"W2521527435","doi":"10.1186/s12864-016-3079-2","title":"Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Forest Service; Natural Resources Canada","funders":"Génome Québec","keywords":"Biology; Genetics; Single-nucleotide polymorphism; Indel; Transcriptome; Genotyping; SNP genotyping; Gene; Pinus contorta; Botany; Genotype; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001687702,0.00025204,0.000308153,0.0001099101,0.0001422121,0.00002225945,0.000257997,0.0001371335,0.0000207438],"category_scores_gemma":[0.00005935596,0.0002062165,0.0001995106,0.0001208707,0.00008352425,0.000004309175,0.00009012761,0.00003535173,0.000005278669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007063041,"about_ca_system_score_gemma":0.0001712705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001349642,"about_ca_topic_score_gemma":0.0002497343,"domain_scores_codex":[0.9984799,0.00003417801,0.000440624,0.0005019824,0.0001124438,0.000430895],"domain_scores_gemma":[0.9990439,0.00002247821,0.0001524821,0.0004759152,0.0001946773,0.0001105524],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000436025,0.00003603347,0.003013415,0.0001775495,0.00006343896,9.722133e-7,0.0001074471,0.0007433138,0.9939349,0.00001670994,0.000538712,0.0009315216],"study_design_scores_gemma":[0.003319534,0.0003284418,0.01544768,0.0002195179,0.0001565516,0.000008950637,0.0001484332,0.0003461959,0.8196037,0.00006138047,0.1595021,0.0008574696],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6438667,0.002122025,0.3527519,0.000198213,0.0002002996,0.000480056,0.0002674951,0.00001115256,0.0001020888],"genre_scores_gemma":[0.8145453,0.0001100813,0.182374,0.0004084033,0.0004917216,0.00005713822,0.0000313947,0.00007541153,0.001906548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1743312,"threshold_uncertainty_score":0.8409265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03321539871749519,"score_gpt":0.2545178651728416,"score_spread":0.2213024664553464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}