{"id":"W2521531894","doi":"10.1111/jvh.12615","title":"Analysis of resistance‐associated substitutions in acute hepatitis C virus infection by deep sequencing across six genotypes and three continents","year":2016,"lang":"en","type":"article","venue":"Journal of Viral Hepatitis","topic":"Hepatitis C virus research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Institute on Drug Abuse; National Institute of Allergy and Infectious Diseases; University of New South Wales","keywords":"NS3; NS5B; NS5A; Virology; Hepatitis C virus; Genotype; Ribavirin; Population; Biology; Deep sequencing; Medicine; Hepacivirus; Virus; Genome; Genetics; Gene; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008229477,0.0001927639,0.0008929046,0.0006744376,0.0001191332,0.0000360217,0.0001241795,0.0001869465,0.0001425311],"category_scores_gemma":[0.000945672,0.0001477386,0.0002608782,0.001143763,0.00025925,0.0005062105,0.00006023441,0.0003233929,0.000006486314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008964512,"about_ca_system_score_gemma":0.0002121812,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.026024,"about_ca_topic_score_gemma":0.3642963,"domain_scores_codex":[0.9973586,0.0001796394,0.001063919,0.0002330036,0.0007371442,0.0004276778],"domain_scores_gemma":[0.9979911,0.0002226417,0.0006502933,0.00021624,0.0007032804,0.000216454],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002256903,0.0001222765,0.9400967,0.00003017714,0.001426397,0.0002255265,0.0003162385,0.00001194533,0.04906568,0.00002558886,0.0002465055,0.008207261],"study_design_scores_gemma":[0.002286295,0.0004713032,0.9876832,0.0004653934,0.0008047468,0.00001828034,0.00001044569,0.0006451139,0.006885855,0.0001286634,0.0004447034,0.0001559631],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950186,0.0008056157,0.002848044,0.000351766,0.0001263779,0.0002161176,0.0004454208,0.00001524768,0.0001728058],"genre_scores_gemma":[0.9832809,0.01603927,0.0002921817,0.00006314258,0.00005119835,0.000009004344,0.000027837,0.0000219709,0.0002144923],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3382722,"threshold_uncertainty_score":0.9804618,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01989218287381654,"score_gpt":0.3214001580641688,"score_spread":0.3015079751903523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}