{"id":"W2522930703","doi":"10.1038/srep26228","title":"Genome-directed analysis of prophage excision, host defence systems, and central fermentative metabolism in Clostridium pasteurianum","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centurion Biofuels (Canada); McMaster University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Organism; CRISPR; Genome; Genetics; Metabolic pathway; Computational biology; Prophage; Gene; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001788969,0.0002855443,0.0002117614,0.0004003446,0.0001567018,0.0001754061,0.0002034202,0.0002333258,0.0003833957],"category_scores_gemma":[0.0002730763,0.0001185725,0.0003509707,0.0005228021,0.0001216766,0.00007494207,0.0002467802,0.0004923505,0.0001400915],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002707666,"about_ca_system_score_gemma":0.0003321353,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002306383,"about_ca_topic_score_gemma":0.002593318,"domain_scores_codex":[0.9998615,0.00001430463,0.00001014721,0.00003268514,0.00004608461,0.00003519728],"domain_scores_gemma":[0.999827,0.00004649803,0.000038079,0.00002039023,0.00003626545,0.00003188101],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005381677,0.00001949505,0.0005682945,0.00003424284,0.000005050155,0.00003801636,0.00002801232,0.0001153335,0.9971927,0.00002793082,0.00001503641,0.001902055],"study_design_scores_gemma":[0.0000204711,0.0006617202,0.1486912,0.00001478725,0.00008656275,0.0005517583,0.0002202249,0.003490189,0.843331,0.0001562469,0.002751178,0.00002467415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935659,0.0003367989,0.003789627,0.00006968901,0.00001065932,0.00003881149,0.001593845,0.00006472837,0.0005300143],"genre_scores_gemma":[0.9841177,0.0004127839,0.01019396,0.00007851278,0.000006783724,0.00003736101,0.004066889,0.00004972608,0.001036287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002306383,"threshold_uncertainty_score":0.004585981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0101047787812791,"score_gpt":0.2584367936889377,"score_spread":0.2483320149076586,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}