{"id":"W2529096635","doi":"10.1105/tpc.16.00486","title":"Characterization of a Pipecolic Acid Biosynthesis Pathway Required for Systemic Acquired Resistance","year":2016,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Pipecolic acid; Biology; Biosynthesis; Resistance (ecology); Computational biology; Biochemistry; Amino acid; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001263939,0.00008904918,0.0001087525,0.00001622143,0.00006601305,0.000006897749,0.0001404709,0.0000904051,0.000004444423],"category_scores_gemma":[0.0000255531,0.00004621306,0.00006284033,0.00003171853,0.00003524922,0.000004017118,0.00001551983,0.000008755166,0.000006763723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008713567,"about_ca_system_score_gemma":0.00004280984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003328193,"about_ca_topic_score_gemma":0.00007109078,"domain_scores_codex":[0.999456,0.00003982071,0.0001646642,0.000156608,0.00006068013,0.0001222584],"domain_scores_gemma":[0.9995493,0.0000230289,0.0001442418,0.0002111513,0.00004941297,0.00002285927],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001677086,0.00001656392,0.00001341589,0.00005044026,0.00001991784,6.332425e-7,0.00006793923,3.287992e-7,0.9980917,0.00008265875,0.001215973,0.0002727354],"study_design_scores_gemma":[0.000258377,0.0000464065,0.00004923893,0.00006682205,0.00002038515,0.00001480485,0.00001297528,0.000004849525,0.9547302,0.000008517303,0.04470693,0.00008053803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934601,0.0008186519,0.00381952,0.0005670083,0.0001026452,0.0003618226,0.0006797266,0.00001115859,0.0001794064],"genre_scores_gemma":[0.9924917,0.000340369,0.00006455647,0.00004990919,0.0001995909,0.00004624165,0.0004527878,0.00001076001,0.006344039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04349096,"threshold_uncertainty_score":0.1884514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01303924765030913,"score_gpt":0.195189953459368,"score_spread":0.1821507058090589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}