{"id":"W2529393938","doi":"10.1177/1040638716662302","title":"Evaluation of a PCR assay on overgrown environmental samples cultured for <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i>","year":2016,"lang":"en","type":"article","venue":"Journal of Veterinary Diagnostic Investigation","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency","funders":"","keywords":"Paratuberculosis; Mycobacterium avium subsp. paratuberculosis; Mycobacterium; Biology; Microbiology; Bacilli; Polymerase chain reaction; Feces; Real-time polymerase chain reaction; Incubation; Herd; Molecular biology; Bacteria; Ecology; Genetics; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001299629,0.0006559948,0.0004334503,0.0003862428,0.0002360703,0.0004389615,0.0003665997,0.0004429687,0.0007891532],"category_scores_gemma":[0.002549462,0.0003447753,0.000291484,0.0003548904,0.0004905351,0.0003082666,0.0002659662,0.000345573,0.0005010499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001570596,"about_ca_system_score_gemma":0.0002499157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001181438,"about_ca_topic_score_gemma":0.001758457,"domain_scores_codex":[0.9980575,0.0006052326,0.0001315239,0.0005924499,0.0004468207,0.0001664695],"domain_scores_gemma":[0.9981751,0.0008485239,0.0002364426,0.0001175566,0.0005477879,0.00007452259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002710526,0.0001429276,0.02035487,0.0001538373,0.00002488214,0.00008170656,0.0002715587,0.000212088,0.970919,0.00003413848,0.00004189903,0.007492123],"study_design_scores_gemma":[0.00002533986,0.003946203,0.07091312,0.00004382061,0.0001478135,0.0008269735,0.0004478765,0.00464807,0.9175798,0.00004642216,0.001349418,0.0000251548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9814387,0.0005846033,0.01649464,0.00004633556,0.00004876265,0.0001045981,0.0001702195,0.00009774519,0.001014366],"genre_scores_gemma":[0.9551137,0.0007627523,0.04172261,0.0001015425,0.00003759661,0.0001324873,0.0007616078,0.0000385053,0.001329157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001299629,"threshold_uncertainty_score":0.00687319,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0715994884035505,"score_gpt":0.319838169517638,"score_spread":0.2482386811140875,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}