{"id":"W2530156217","doi":"10.1128/genomea.01051-16","title":"Genome Sequence of vB_AbaS_TRS1, a Viable Prophage Isolated from Acinetobacter baumannii Strain A118","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Public Health England; University of the West of England","keywords":"Prophage; Biology; Whole genome sequencing; Strain (injury); Acinetobacter baumannii; Genome; Genetics; Microbiology; Bacteria; Gene; Escherichia coli; Bacteriophage; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001499928,0.000267957,0.0002794909,0.00005029729,0.00009212593,0.00001826431,0.0003606092,0.0001239908,0.0001891017],"category_scores_gemma":[0.00002054622,0.00020313,0.0001015762,0.00009995674,0.000138757,0.000003931423,0.0002538105,0.00005006746,0.00006477706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003824691,"about_ca_system_score_gemma":0.00008622983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000494785,"about_ca_topic_score_gemma":0.00001941808,"domain_scores_codex":[0.9983786,0.00004556463,0.0003998598,0.0005511928,0.0001896553,0.0004351646],"domain_scores_gemma":[0.998974,0.0000100499,0.0001873329,0.0005520881,0.0001775919,0.00009893037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001099145,0.00007449042,0.00538297,0.00001465823,0.0002738342,0.000004744586,0.0001289883,0.00001861014,0.9929833,0.000009368694,0.000104424,0.0008947074],"study_design_scores_gemma":[0.005633387,0.003175127,0.1708105,0.000114575,0.0001967403,0.0000162018,0.0002486096,0.00002721654,0.211224,0.001191703,0.6057301,0.00163179],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915721,0.001650944,0.001045648,0.0001166464,0.0001971757,0.0003635043,0.004168999,0.000007157215,0.0008778375],"genre_scores_gemma":[0.9946154,0.0006923461,0.0006251236,0.0001812569,0.0002043236,0.00004111105,0.0006692034,0.00003220805,0.002938979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7817593,"threshold_uncertainty_score":0.8283401,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01940632043651683,"score_gpt":0.2383647676091635,"score_spread":0.2189584471726467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}