{"id":"W2530156217","doi":"10.1128/genomea.01051-16","title":"Genome Sequence of vB_AbaS_TRS1, a Viable Prophage Isolated from Acinetobacter baumannii Strain A118","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Public Health England; University of the West of England","keywords":"Prophage; Biology; Whole genome sequencing; Strain (injury); Acinetobacter baumannii; Genome; Genetics; Microbiology; Bacteria; Gene; Escherichia coli; Bacteriophage; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001103936,0.0006234255,0.0004771033,0.001006984,0.0003717214,0.0003653552,0.0002587787,0.0003982759,0.001648067],"category_scores_gemma":[0.0003187368,0.0001695704,0.000459839,0.001553035,0.0001778153,0.0001618344,0.0001781855,0.0007861048,0.0009848024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003865641,"about_ca_system_score_gemma":0.0007076171,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008184917,"about_ca_topic_score_gemma":0.005177725,"domain_scores_codex":[0.9999019,0.00001103743,0.000008515999,0.00002520333,0.00003427042,0.00001909912],"domain_scores_gemma":[0.9997665,0.00005859883,0.00004944947,0.00001702209,0.00004782679,0.00006057808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007166488,0.000080427,0.002085889,0.0002848773,0.00001797402,0.0002701414,0.0001338292,0.0002176945,0.9875782,0.000148446,0.0005674576,0.007898305],"study_design_scores_gemma":[0.0003524965,0.002215617,0.4015342,0.0002665734,0.0005749711,0.004696322,0.001293131,0.005024198,0.4868177,0.0006345042,0.09638323,0.0002071846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8824629,0.001392173,0.00556018,0.000356019,0.0001587871,0.0001977763,0.1060787,0.0003694443,0.003424015],"genre_scores_gemma":[0.6874847,0.001655168,0.01676725,0.0001541277,0.00007005186,0.0001639753,0.2871962,0.0002135531,0.006295023],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008184917,"threshold_uncertainty_score":0.01627451,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01940632043651683,"score_gpt":0.2383647676091635,"score_spread":0.2189584471726467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}