{"id":"W2530546106","doi":"10.1038/nmicrobiol.2016.185","title":"Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":689,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada","funders":"Agence Nationale de la Recherche","keywords":"Listeria monocytogenes; Biology; Outbreak; Population; Genotyping; Genome; Lineage (genetic); Phylogenetic tree; Transmission (telecommunications); Population genomics; Virulence; Genetics; Evolutionary biology; Genomics; Virology; Genotype; Gene; Environmental health; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000447929,0.0002273666,0.0002606281,0.0007909667,0.0001627086,0.0005572586,0.0004248524,0.000529029,0.0004806054],"category_scores_gemma":[0.0007435597,0.0002266973,0.0002530362,0.0005483838,0.0002650404,0.0003801254,0.0005573457,0.0005862463,0.0002723171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003119109,"about_ca_system_score_gemma":0.0002088498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001080257,"about_ca_topic_score_gemma":0.001331732,"domain_scores_codex":[0.9997337,0.00005179417,0.00001160107,0.00008508824,0.00007715505,0.00004063657],"domain_scores_gemma":[0.9996184,0.0001095267,0.00009120709,0.0000498884,0.00008372188,0.00004724826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002062498,0.00006128101,0.03404398,0.00005331259,0.00003390484,0.00002940494,0.0001507972,0.0006892132,0.948939,0.0002464004,0.0002665113,0.01527999],"study_design_scores_gemma":[0.00002782339,0.0005667685,0.6713498,0.0000340365,0.0001440988,0.0007830806,0.0008503518,0.0137795,0.3044733,0.001587985,0.006347401,0.00005582668],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9838217,0.0007363878,0.0118335,0.0002146727,0.00001603155,0.00002151192,0.002079085,0.0001536781,0.001123473],"genre_scores_gemma":[0.9858876,0.0004883106,0.009730281,0.0001793536,0.00001334839,0.00002613079,0.002757654,0.00003522626,0.00088204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001080257,"threshold_uncertainty_score":0.002368927,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03057300780446093,"score_gpt":0.3220010142355851,"score_spread":0.2914280064311242,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}