{"id":"W2530748177","doi":"10.1093/bioinformatics/btw634","title":"ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data","year":2016,"lang":"en","type":"article","venue":"Bioinformatics","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":106,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"OVC Pet Trust; Ministerstvo Školství, Mládeže a Tělovýchovy; Central European Institute of Technology; University of Guelph","keywords":"Computer science; Task (project management); Filter (signal processing); Interpretation (philosophy); Web application; Data science; Computational biology; World Wide Web; Biology; Programming language","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00513996,0.002840106,0.001416639,0.00392534,0.001016361,0.002952755,0.002717664,0.00130335,0.03188404],"category_scores_gemma":[0.01010544,0.001573176,0.002216083,0.001818776,0.0008397303,0.00226284,0.003327834,0.002074217,0.01373914],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007093651,"about_ca_system_score_gemma":0.001568832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001588403,"about_ca_topic_score_gemma":0.003276861,"domain_scores_codex":[0.9982733,0.0004546845,0.0001719412,0.0004781674,0.0004584571,0.0001634976],"domain_scores_gemma":[0.9944912,0.003869073,0.0003805336,0.0005763338,0.0003783414,0.0003045538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004222993,0.000373156,0.02221842,0.004669769,0.001336296,0.001765185,0.001950188,0.02220937,0.0960913,0.009759448,0.5745857,0.2608181],"study_design_scores_gemma":[0.001508719,0.0004116557,0.02063634,0.0006390138,0.000403183,0.002379433,0.0005767599,0.5261121,0.1379319,0.03176584,0.2769839,0.0006510069],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01410059,0.0004185266,0.3120578,0.0005435065,0.0001809323,0.0003958342,0.04308302,0.6265305,0.002689274],"genre_scores_gemma":[0.1075299,0.0004963392,0.6956081,0.0008742904,0.0001836149,0.002275782,0.07268291,0.1147103,0.00563879],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.03188404,"threshold_uncertainty_score":0.1066628,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03201650756851279,"score_gpt":0.2756753969730611,"score_spread":0.2436588894045483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}