{"id":"W2531886129","doi":"10.1371/journal.ppat.1005865","title":"A Single Nucleotide Polymorphism in Human APOBEC3C Enhances Restriction of Lentiviruses","year":2016,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Cancer Institute; Fred Hutchinson Cancer Research Center","keywords":"Biology; Genetics; Cytidine deaminase; Gene; Somatic hypermutation; Single-nucleotide polymorphism; Allele; Genotype; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008670679,0.0001002671,0.0001836062,0.0001696231,0.00007069416,0.0000037282,0.0001023106,0.00008669259,0.000467463],"category_scores_gemma":[0.0001050665,0.00006757159,0.000060543,0.000121054,0.0001484803,0.000071984,0.00004275042,0.00006778694,0.0006918483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005941543,"about_ca_system_score_gemma":0.00003737214,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001422006,"about_ca_topic_score_gemma":0.0001552178,"domain_scores_codex":[0.9990917,0.0001546989,0.000212588,0.0002059361,0.00004596177,0.000289119],"domain_scores_gemma":[0.9995617,0.0001099436,0.00007397414,0.0001941888,0.00003459486,0.00002562953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005410438,0.0006767859,0.03167854,0.00000810728,0.00007465582,0.00001941801,0.0001197769,3.618368e-8,0.9625359,0.0001420847,0.000307651,0.004382905],"study_design_scores_gemma":[0.001010641,0.0003681456,0.02377276,0.00008658697,0.00001893013,0.000003317521,0.00004673013,3.609798e-8,0.9722405,0.0001787569,0.002194172,0.00007940154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969156,0.0007493817,0.00001804147,0.0001517527,0.00009323397,0.0001656528,0.00017602,0.00003290982,0.001697374],"genre_scores_gemma":[0.9984777,0.0001973104,0.0000290572,0.00001189445,0.00001975929,0.00003034895,0.00002850945,0.00001053824,0.001194868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009704583,"threshold_uncertainty_score":0.8892541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0351340547592958,"score_gpt":0.2619968511243915,"score_spread":0.2268627963650957,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}