{"id":"W2531935932","doi":"10.1128/mbio.01253-16","title":"Genetic Dissection of the Type VI Secretion System in <i>Acinetobacter</i> and Identification of a Novel Peptidoglycan Hydrolase, TagX, Required for Its Biogenesis","year":2016,"lang":"en","type":"article","venue":"mBio","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Peptidoglycan; Biogenesis; Secretion; Identification (biology); Microbiology; Biology; Acinetobacter; Hydrolase; Computational biology; Gene; Genetics; Bacteria; Enzyme; Biochemistry; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001646079,0.00007549725,0.00011389,0.00004258228,0.00003352232,0.000006054928,0.00009136862,0.00006806179,8.471848e-7],"category_scores_gemma":[0.0001484668,0.00004928229,0.00004090268,0.0001125652,0.00006951409,0.00000510462,0.00006904759,0.00001358687,4.381477e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002527386,"about_ca_system_score_gemma":0.00003067894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002916719,"about_ca_topic_score_gemma":0.0001295343,"domain_scores_codex":[0.9993333,0.00003846971,0.0002401505,0.0001917154,0.00008240577,0.0001140054],"domain_scores_gemma":[0.9994621,0.0000154107,0.0001446201,0.0002109761,0.0001460134,0.00002091942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001683649,0.00002857933,0.01208989,0.0001435056,0.00002458403,6.286672e-8,0.00002941884,0.00000292194,0.9869467,0.00001864129,0.00003623527,0.0005111243],"study_design_scores_gemma":[0.0006206412,0.0001828306,0.1521217,0.0000798112,0.00001463472,0.000003808425,0.00004118609,0.0001475171,0.8464987,0.000003658522,0.0002283917,0.0000570856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981601,0.0002400966,0.0008747514,0.00008777986,0.0001053103,0.000381124,0.0001333179,0.000004071931,0.00001350162],"genre_scores_gemma":[0.9995191,0.0001272321,0.00007361571,0.000004110135,0.00004892706,0.00004314713,0.00001914547,0.00001014006,0.0001546392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.140448,"threshold_uncertainty_score":0.2009674,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01544744901657396,"score_gpt":0.2551119485616089,"score_spread":0.2396644995450349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}