{"id":"W2534566231","doi":"10.7717/peerj.2627","title":"Proliferation of group II introns in the chloroplast genome of the green alga <i>Oedocladium carolinianum</i> (Chlorophyceae)","year":2016,"lang":"en","type":"article","venue":"PeerJ","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Chloroplast DNA; Chlorophyceae; Genome; Clade; Group II intron; Gene; Phylogenetic tree; Green algae; Intron; Genetics; Chlorophyta; Inverted repeat; Evolutionary biology; Botany; Algae; RNA splicing; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005706829,0.0001415114,0.000105246,0.0003961945,0.0002731531,0.0003276636,0.0001227341,0.0001862323,0.0004879539],"category_scores_gemma":[0.0002677076,0.00008566123,0.0001080664,0.000327928,0.0001620222,0.0001494632,0.0001938668,0.0002602584,0.0001591582],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002206482,"about_ca_system_score_gemma":0.000301019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002288549,"about_ca_topic_score_gemma":0.002650084,"domain_scores_codex":[0.9999291,0.000004187286,0.000004362086,0.00003608594,0.00001550403,0.00001070153],"domain_scores_gemma":[0.999729,0.00005047541,0.00009935659,0.00002332881,0.00005497934,0.00004283351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001134361,0.00001689603,0.03057778,0.00008036289,0.00001262725,0.0001500742,0.0002208841,0.00006952944,0.9618281,0.0001085241,0.00006964133,0.006752188],"study_design_scores_gemma":[0.00002386709,0.0002454559,0.8398975,0.00005810552,0.00008481122,0.001544716,0.000584469,0.001136448,0.1445177,0.0001762909,0.01170633,0.00002444767],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988317,0.0002570997,0.0002474601,0.00001675976,0.000002587705,0.000003538076,0.000277323,0.00001046756,0.0003529999],"genre_scores_gemma":[0.9955292,0.0001880642,0.001307389,0.00005031335,0.000007130317,0.00001900479,0.002187509,0.00001654121,0.0006949045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002288549,"threshold_uncertainty_score":0.004550397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007216415408748188,"score_gpt":0.2032739895765653,"score_spread":0.1960575741678172,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}