{"id":"W2534566231","doi":"10.7717/peerj.2627","title":"Proliferation of group II introns in the chloroplast genome of the green alga <i>Oedocladium carolinianum</i> (Chlorophyceae)","year":2016,"lang":"en","type":"article","venue":"PeerJ","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Chloroplast DNA; Chlorophyceae; Genome; Clade; Group II intron; Gene; Phylogenetic tree; Green algae; Intron; Genetics; Chlorophyta; Inverted repeat; Evolutionary biology; Botany; Algae; RNA splicing; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002082756,0.0001086266,0.0001475204,0.00002064124,0.00007175138,0.000003681958,0.0003125847,0.000068412,0.000006619561],"category_scores_gemma":[0.0000470632,0.00005445385,0.00009229963,0.00007615505,0.000150732,9.45411e-7,0.000182497,0.00004748407,0.000001486265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000080869,"about_ca_system_score_gemma":0.00004098854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000995662,"about_ca_topic_score_gemma":0.000424584,"domain_scores_codex":[0.9992263,0.00006316102,0.0002445987,0.000179732,0.0001277637,0.0001584937],"domain_scores_gemma":[0.9993804,0.00002297211,0.0001194817,0.0003853547,0.00007310846,0.00001866724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005031865,0.00005646901,0.02492288,0.00001329936,0.00003572678,2.322568e-7,0.0004784788,0.00002099508,0.9732429,0.0002394026,0.0001541834,0.0007850545],"study_design_scores_gemma":[0.001415516,0.0007634257,0.6477384,0.00002653446,0.00005658067,0.0000144294,0.0001791934,0.00001555664,0.3063751,0.0006186923,0.0425566,0.000239953],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968503,0.000502656,0.00007779645,0.001580166,0.0001186544,0.0002539729,0.00007463706,0.000001046217,0.0005408312],"genre_scores_gemma":[0.9990602,0.000167751,0.00006800632,0.0001716776,0.0001959591,0.00003057614,0.000008660699,0.00001018258,0.0002870552],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6668679,"threshold_uncertainty_score":0.2220564,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007216415408748188,"score_gpt":0.2032739895765653,"score_spread":0.1960575741678172,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}