{"id":"W2535141078","doi":"10.1101/gr.209841.116","title":"Direct chromosome-length haplotyping by single-cell sequencing","year":2016,"lang":"en","type":"article","venue":"Genome Research","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"European Research Council","keywords":"Biology; International HapMap Project; Genetics; Haplotype; Ploidy; Genome; Loss of heterozygosity; Indel; Chromosome; Computational biology; Single-nucleotide polymorphism; Allele; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006726409,0.0001461954,0.0001425241,0.00009081207,0.0001861347,0.00006316422,0.0003491308,0.0001386357,0.00008837692],"category_scores_gemma":[0.0002870368,0.0001182564,0.00007069841,0.0001645805,0.0001654913,0.000004812709,0.0003359912,0.0001229405,0.0001888024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002459699,"about_ca_system_score_gemma":0.0002720043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006130942,"about_ca_topic_score_gemma":0.00003078494,"domain_scores_codex":[0.9982029,0.0001107546,0.0001914619,0.0005156894,0.0002953789,0.0006838805],"domain_scores_gemma":[0.998919,0.0001299089,0.00004209405,0.0005227127,0.0001910327,0.0001953033],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003341851,0.00004899284,0.0002043278,0.00002210572,0.00001661123,0.000006738096,0.00003671376,0.000007015704,0.9884293,0.00002816657,0.006917768,0.00424884],"study_design_scores_gemma":[0.0004162873,0.0003407564,0.00007136197,0.00001905996,0.000003933173,0.000005006196,0.00004753319,0.000003517605,0.7090986,0.0000630532,0.2897486,0.0001821904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9606639,0.008768205,0.001282838,0.0005355183,0.0001590403,0.0003228039,0.0001942997,0.00002754222,0.02804593],"genre_scores_gemma":[0.9904742,0.003061758,0.0002825203,0.0001012776,0.000516367,0.00003913354,0.00005877837,0.00005307204,0.005412939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2828309,"threshold_uncertainty_score":0.4822357,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04643468842197938,"score_gpt":0.2971124715114068,"score_spread":0.2506777830894274,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}