{"id":"W2535555849","doi":"10.1017/s0950268816001965","title":"Unusual Legionnaires' outbreak in cool, dry Western Canada: an investigation using genomic epidemiology","year":2016,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; South Health Campus; Libin Cardiovascular Institute of Alberta; Calgary Laboratory Services; University of Calgary; Alberta Health Services; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada; Calgary Laboratory Services; Alberta Health Services","keywords":"Outbreak; Legionnaires' disease; Legionella; Legionella pneumophila; Epidemiology; Medicine; Veterinary medicine; Environmental health; Biology; Virology; Internal medicine; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002381122,0.0003889255,0.0002563374,0.001426647,0.00337285,0.001385678,0.0005461937,0.0003809809,0.0005257472],"category_scores_gemma":[0.0006759221,0.0002397719,0.0001706832,0.003026963,0.001033703,0.0002688909,0.001034989,0.0004588046,0.00007094846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008829965,"about_ca_system_score_gemma":0.01343954,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9600902,"about_ca_topic_score_gemma":0.979223,"domain_scores_codex":[0.999595,0.00002886269,0.00001658591,0.00005641041,0.0001215766,0.0001816347],"domain_scores_gemma":[0.9994771,0.000034443,0.00009326781,0.00001268991,0.0001915817,0.0001909414],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009557214,0.00009283386,0.9777815,0.0000616696,0.00003375856,0.003590148,0.005243578,0.0001764677,0.004991474,0.0001316435,0.0005247315,0.00727649],"study_design_scores_gemma":[0.000005476683,0.00003768777,0.990184,0.00001898274,0.00001443899,0.0006988997,0.00741612,0.0002903495,0.0002106297,0.00003350418,0.001080782,0.000009181493],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983529,0.0001180967,0.0001344252,0.00009890956,0.000003506612,0.0000664126,0.0003591187,0.000005766151,0.0008609108],"genre_scores_gemma":[0.9980468,0.0003912824,0.0005241345,0.0001510394,0.000005375784,0.00001663109,0.0004887391,0.000003376725,0.0003727729],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03990984,"threshold_uncertainty_score":0.08028972,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05807649495144136,"score_gpt":0.3269747840051814,"score_spread":0.26889828905374,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}