{"id":"W2536627930","doi":"10.1093/sysbio/syw096","title":"Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials","year":2016,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; University of Glasgow; World Health Organization","keywords":"Epithet; Biology; Virus classification; Genus; Nomenclature; Zoology; Evolutionary biology; Genealogy; Classics; Taxonomy (biology); Genetics; Genome; History","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006903664,0.00008977223,0.0004901931,0.00002181455,0.00003700134,0.000003411487,0.0001642838,0.00005739326,0.00003831114],"category_scores_gemma":[0.0006842362,0.00002317606,0.00004872356,0.00006663851,0.0002232306,0.00002427042,0.0002086454,0.00002734832,0.00001083454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001373363,"about_ca_system_score_gemma":0.000005674812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007036665,"about_ca_topic_score_gemma":0.0001250771,"domain_scores_codex":[0.9988351,0.0003409561,0.0003676758,0.000198889,0.00009833452,0.0001590456],"domain_scores_gemma":[0.9985849,0.001014278,0.0001725889,0.00007131016,0.0001001314,0.00005680045],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003100345,0.00003842269,0.008568395,0.005560722,0.000027438,2.303398e-7,0.0001916724,1.421616e-8,0.981684,0.00090545,0.00002707336,0.002965618],"study_design_scores_gemma":[0.0004585836,0.00200061,0.4831012,0.008546627,0.0000411312,0.000006580886,0.002410399,0.000006691558,0.4993035,0.003020344,0.0007654803,0.0003388519],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880559,0.0100664,0.00000462917,0.0009403471,0.00008378495,0.0004653545,0.0003249686,0.00001099227,0.00004756101],"genre_scores_gemma":[0.9973168,0.002597605,0.00001568809,0.000006352686,0.00003044934,0.00001769213,0.000001553094,2.861601e-7,0.00001358324],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4823804,"threshold_uncertainty_score":0.09450921,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1287786998774259,"score_gpt":0.3064640649069164,"score_spread":0.1776853650294904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}